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microbiomedata
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nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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write a notebook report class.slot paths that take a ControlledTermValue* range
#2058
turbomam
opened
3 weeks ago
0
GitHub workflow to preview documentation changes/builds with example changes
#2057
sujaypatil96
closed
3 weeks ago
4
`berkeley-schema-fy24`: Delete obsolete code, including code obsoleted by Berkeley schema changes
#2056
eecavanna
closed
2 weeks ago
0
`berkeley-schema-fy24`: Implement migrator that adds `replaces` field to `WorkflowChain` documents
#2055
eecavanna
closed
2 weeks ago
1
Workflow execution constraints nmdc schema 2053
#2054
turbomam
closed
3 weeks ago
0
backmerge issue with ID mention pattern constraints on WorkflowExecution
#2053
aclum
closed
3 weeks ago
3
`berkeley-schema-fy24`: Make migrator that removes `MetagenomeAnnotation.gold_analysis_project_identifiers` field
#2052
eecavanna
closed
3 weeks ago
2
Microbiomedata main
#2051
turbomam
closed
3 weeks ago
0
standardize quotation marks in schema and example data files
#2050
turbomam
opened
3 weeks ago
2
reassess temporal modeling esp. for WorkflowChain
#2049
turbomam
opened
4 weeks ago
1
`Extraction` class lacks a constraint that indicates its expected usage
#2048
anastasiyaprymolenna
opened
4 weeks ago
0
generate reports of all observed MIxS environmental triad slot values, within a given context
#2047
turbomam
opened
4 weeks ago
2
Map 1:1 Database slots to PlannedProcess subclasses with depth of 1
#2046
aclum
closed
3 weeks ago
1
`berkeley-schema-fy24`: Implement migrator that merges some collections
#2045
eecavanna
closed
3 weeks ago
5
add metagnome input id pattern constraint
#2044
turbomam
closed
4 weeks ago
0
Make `ExtractionTarget` mutlivalued to accommodate MPLEX extractions
#2043
brynnz22
closed
3 weeks ago
1
`berkeley-schema-fy24`: Update migrators to use optimized adapter methods
#2042
eecavanna
closed
4 weeks ago
0
Poetry `linkml-runtime` dependency version update
#2041
sujaypatil96
closed
4 weeks ago
0
regenerated poetry.lock
#2040
turbomam
closed
4 weeks ago
0
don't pin pymongo in pyproject.toml
#2039
turbomam
closed
4 weeks ago
0
remove unused Python code
#2038
turbomam
opened
4 weeks ago
2
nmdc-schema needs a more global mechanism for capturing ownership-like credit
#2037
turbomam
opened
4 weeks ago
8
Restore recent migrators; install linters
#2036
turbomam
closed
4 weeks ago
0
establish technical and social barriers to clever schema workarounds
#2035
turbomam
opened
4 weeks ago
1
restore schema module independence tests
#2034
turbomam
opened
4 weeks ago
1
define "soft schema freeze" along with exceptions framework
#2033
turbomam
opened
4 weeks ago
6
Restore adapter method lost during PR #2009 merge: `do_for_each_document`
#2032
eecavanna
closed
4 weeks ago
3
Migrations: Restore adapter method that was discarded during merge
#2031
eecavanna
closed
4 weeks ago
2
degenerate metagenome sequencing
#2030
turbomam
closed
4 weeks ago
0
tooltips not alt descriptions or display hints
#2029
turbomam
closed
4 weeks ago
0
review id_locus pattern
#2028
aclum
opened
4 weeks ago
6
`berkeley-schema-fy24`: Implement migrator that removes slots from `nmdc:MassSpectrometry` documents
#2027
eecavanna
closed
4 weeks ago
0
remove-keep-keep-paths
#2026
turbomam
closed
1 month ago
0
Markdown docs contain broken links
#2025
github-actions[bot]
opened
1 month ago
0
Conflict resolved backmerge
#2019
turbomam
closed
1 month ago
0
Remove `acquisition_category` slot and `AcquisitionCategoryEnum`
#2018
kheal
closed
1 month ago
3
DO NOT MERGE: Biosample sparsity analysis
#2017
turbomam
opened
1 month ago
0
`berkeley-schema-fy24`: `make squeaky-clean all` fails at `gendoc` command
#2016
eecavanna
closed
1 month ago
6
Migrations: Update `create_migrator.py` to use template file and omit leading/trailing newlines
#2015
eecavanna
closed
1 month ago
0
Migrations: Update migrator skeleton creation tool to use template and remove leading/trailing newlines
#2014
eecavanna
closed
1 month ago
0
Delete queries for orphan functional_annotation_agg records and id non-conformaing Data Objects
#2013
mbthornton-lbl
opened
1 month ago
1
Identify redundant EMP500 records and generate queries:run delete commands
#2012
aclum
closed
4 weeks ago
0
Command to generate delete API requests legacy orphan data objects and functional annotation agg records
#2011
mbthornton-lbl
closed
2 weeks ago
3
Migrator: Write migrator for `NomAnalysisActivity` documents
#2010
aclum
closed
2 weeks ago
8
Migrations: Implement `set_field_of_each_document` adapter method
#2009
eecavanna
closed
1 month ago
3
Migrations: Implement `set_field_of_each_document` Adapter method
#2008
eecavanna
closed
1 month ago
0
Implement PoC of Makefile target documentation pattern
#2007
eecavanna
opened
1 month ago
0
Migrations: Implement `do_for_each_document` adapter method
#2006
eecavanna
closed
1 month ago
1
Migrations: Implement `do_for_each_document` Adapter method
#2005
eecavanna
closed
1 month ago
0
Migrations: Update migrators to raise Exception instead of printing error message
#2004
eecavanna
closed
1 month ago
3
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