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microbiomedata
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nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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Bump certifi from 2024.6.2 to 2024.7.4
#2111
dependabot[bot]
opened
9 hours ago
0
Remove obsolete schema variants, eliminate extra carets in patterns, and update dependency to avoid security bug
#2110
turbomam
opened
2 days ago
2
Data submission api fetch
#2108
turbomam
closed
2 days ago
0
Mam cumulative vs minimal acceptance
#2107
turbomam
closed
2 days ago
0
Minimal acceptance
#2106
turbomam
closed
2 days ago
0
Add PR template specific to the schema soft freeze (`nmdc-schema`)
#2105
mslarae13
closed
1 day ago
3
Add PR template to `nmdc-schema`
#2104
mslarae13
closed
1 day ago
0
carets go on settings not syntaxes
#2103
turbomam
closed
2 days ago
1
2096 update urllib3 version
#2102
turbomam
closed
2 days ago
1
2095 replace uses of nmdc schema mergedyaml with nmdc schema accepting legacy idsyaml
#2101
turbomam
closed
2 days ago
1
`berkeley-schema-fy24`: Schema version underlying `SchemaView` instance changes from one release to the next
#2100
eecavanna
opened
4 days ago
0
Remove `nmdc_schema/nmdc_schema_merged.yaml` along with all references to it
#2099
turbomam
opened
4 days ago
4
Limit regex-anchoring carets (`^`) to LinkML `settings`, not `structured_pattern`s
#2098
turbomam
opened
4 days ago
4
Use newer version of `urllib3` to avoid moderate security bug
#2097
turbomam
opened
4 days ago
5
force update of `urllib3` version
#2096
turbomam
opened
4 days ago
2
replace uses of `nmdc_schema_merged.yaml` with `nmdc_schema/nmdc_materialized_patterns.yaml`
#2095
turbomam
opened
4 days ago
1
Remove `nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml` and all references to it
#2094
turbomam
opened
4 days ago
3
remove logic to repair curies
#2093
aclum
opened
4 days ago
1
extra leading caret in `structured_pattern`s
#2092
aclum
opened
4 days ago
1
Allow `nmdc_data.py` consumer to specify which variant of schema they want to access
#2091
eecavanna
closed
4 days ago
2
Docker Compose shows warning saying `version` (specifier) is obsolete
#2090
eecavanna
opened
1 week ago
0
Update migrator to keep `DataObject.was_generated_by` in sync with updated `id`
#2088
eecavanna
closed
1 week ago
2
Render `Mappings` section generally on all element documentation pages
#2087
sujaypatil96
opened
1 week ago
2
Migrator: Update `migrator_from_10_3_0_to_10_4_0.py` so it also updates `was_generated_by` values
#2086
eecavanna
closed
1 week ago
1
2084 tighter pattern constraint on was_generated_by
#2085
aclum
closed
2 weeks ago
1
tighter pattern constraint on was_generated_by
#2084
aclum
closed
2 weeks ago
0
Use `--include-range-class-descendants` flag in JSON Schema generator calls
#2083
pkalita-lbl
closed
2 weeks ago
1
Remove `activity_set` slot from `Database` class
#2082
aclum
closed
2 weeks ago
4
Remove WorkflowExeuctionActivity as a range for Database slot activity_set
#2081
aclum
closed
2 weeks ago
0
produce a nmdc-schema YAML artifact with deprecated elements included
#2080
sierra-moxon
opened
2 weeks ago
1
Facilitate access to `nmdc_materialized_patterns` schema variant via PyPI package
#2079
eecavanna
closed
4 days ago
2
2024-06-18 `id` pattern validation summaries and SPARQL-based referential integrity checks on MongoDB contents with and without migration
#2078
turbomam
opened
2 weeks ago
6
Rename branches to eliminate Berkeley commits from `main`
#2077
eecavanna
closed
2 weeks ago
6
v11.0.0-rc.16
#2076
turbomam
closed
2 weeks ago
0
Bump urllib3 from 2.2.1 to 2.2.2
#2075
dependabot[bot]
closed
2 weeks ago
1
Revert "Merge branch 'main' into main"
#2074
eecavanna
closed
2 weeks ago
1
mismatched-alternative-ids
#2073
turbomam
opened
2 weeks ago
1
`berkeley-schema-fy24`: Some migrators use incorrect collection name (instead of `mags_set`)
#2072
eecavanna
closed
2 weeks ago
0
Implement a "no op" migrator from `v10.4.0` to `v10.5.4`
#2071
eecavanna
closed
2 weeks ago
1
Migrations: Implement "no op" migrator from `v10.4.0` to `v10.5.4`
#2070
eecavanna
closed
2 weeks ago
0
Publish schema to PyPI via GitHub Release `v10.5.4`
#2069
aclum
closed
2 weeks ago
1
`berkeley-schema-fy24`: Update migrators to account for `WorkflowChain` class being removed
#2068
eecavanna
closed
3 weeks ago
0
Migrations: Make it easier to test migrators against a Mongo database
#2067
eecavanna
opened
3 weeks ago
0
check if classes associated with `alternative_identifiers` can use ANY `alternative_identifiers`
#2066
turbomam
opened
3 weeks ago
5
Find a home for these comments taken from `src/scripts/report_biosamples_per_study.py`
#2065
turbomam
opened
3 weeks ago
0
`berkeley-schema-fy24`: Implement super migrator that runs all partial migrators in correct order
#2064
eecavanna
closed
3 weeks ago
1
Delete Class WorkflowChain in Berkeley schema
#2063
aclum
closed
3 weeks ago
2
`berkeley-schema-fy24`: Facilitate access to `nmdc_materialized_patterns` schema via PyPI package
#2062
eecavanna
closed
3 weeks ago
2
`has_input`, `has_output`, and `has_process_parts` slots on `ProtocolExecution` need pattern constraints
#2061
kheal
closed
3 weeks ago
0
Remodel class that aggregates steps of `WorkflowExecution` for easier schema traversal
#2060
kheal
opened
3 weeks ago
1
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