mikemc vivo-vitro issues

mikemc / vivo-vitro

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Create a table with 2021 DNA concentration measurements

#25 mikemc opened 2 years ago
0
Back up and document data from sequencing centers

#24 mikemc opened 2 years ago
2
Investigate v2_A2_ASV60

#23 mikemc opened 3 years ago
1
Import measurements and sample data for the 2021 experiment

#22 mikemc opened 3 years ago
1
Edit 2021 experiment illustration to reflect the final experiment

#21 mikemc opened 3 years ago
1
Create sample submission forms for sequencing centers

#20 mikemc opened 3 years ago
0
Add notes to sample metadata

#19 mikemc opened 3 years ago
0
Import OD measurements from 2019 experiment

#18 mikemc opened 3 years ago
1
Import experiment schematic illustrations

#17 mikemc closed 3 years ago
1
Create new variables for the sample metadata

#16 mikemc opened 3 years ago
0
Confirm absence of effect of aliquot number in fecal samples

#15 mikemc closed 3 years ago
1
Develop predictive model of DNA yield in terms of number of inoculum or T. mobilis pellets in first experiment

#14 mikemc closed 3 years ago
0
Create best estimate of compositional difference between fecal and inoculum specimens

#13 mikemc closed 3 years ago
1
Determine mixing volumes for the mock communities for the follow-up

#12 mikemc closed 3 years ago
0
Import illustrations

#11 mikemc opened 3 years ago
1
List and explain possible explanations for variation in differential bias between specimen types

#10 mikemc opened 3 years ago
0
Evaluate internal contamination as a potential explanation for observed variation in differential bias

#9 mikemc opened 3 years ago
0
Add host reads to shotgun count tables

#8 mikemc closed 3 years ago
1
Add MD5s of raw and intermediate sequencing-read files

#7 mikemc opened 3 years ago
0
Upload sequence reads to the SRA

#6 mikemc opened 3 years ago
0
Examine E. coli Nissle vs. HS differential bias in the shotgun data

#5 mikemc closed 3 years ago
1
Request quotes from sequencing centers for follow-up experiment

#4 mikemc closed 3 years ago
0
Create Distill site for viewing analyses

#3 mikemc opened 3 years ago
0
Create functions for importing microbiome data

#2 mikemc closed 3 years ago
1
redo Silva taxonomy assignment

#1 mikemc opened 3 years ago
0