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miykael
/
atlasreader
Python interface for generating coordinate tables and region labels from statistical MRI images
BSD 3-Clause "New" or "Revised" License
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32
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Implements reviewer requested changes
#99
miykael
closed
5 years ago
2
JOSS REVIEW: target audience
#98
andrewheusser
closed
5 years ago
2
JOSS REVIEW: repo is large
#97
andrewheusser
closed
5 years ago
3
JOSS REVIEW: typo in example notebook
#96
andrewheusser
closed
5 years ago
2
JOSS REVIEW: redundant install requires?
#95
andrewheusser
closed
5 years ago
2
JOSS REVIEW: Update links in CONTRIBUTING.md
#94
andrewheusser
closed
5 years ago
2
JOSS REVIEW: Not able to retrieve statmap from neurovault
#93
andrewheusser
closed
5 years ago
5
Adds zenodo DOI for beta release v0.0.2
#92
miykael
closed
5 years ago
2
Write sentences in markdown on individual lines
#91
KirstieJane
closed
5 years ago
1
provided some typo fixes and suggested edits
#90
danjgale
closed
5 years ago
2
Update README and notebook
#89
miykael
closed
5 years ago
2
Add license text from PR #71 to __init__
#88
miykael
closed
5 years ago
3
License message is not resolved yet
#87
miykael
closed
5 years ago
2
Revert "ENH: Adds license message on first import"
#86
miykael
closed
5 years ago
1
Correct code coverage
#85
miykael
closed
5 years ago
2
FIX: file extension bug
#84
miykael
closed
5 years ago
2
can not install through pip
#83
EhsanTadayon
closed
5 years ago
6
ENH: removes some more numpy warnings
#82
miykael
closed
5 years ago
4
ENH: make cluster extent inclusive
#81
miykael
closed
5 years ago
1
ENH: adds test to check table output
#80
miykael
closed
5 years ago
3
ENH: Adds notebook tests on travis
#79
miykael
closed
5 years ago
2
ENH: add atlas marsatlas_colin27
#78
miykael
closed
5 years ago
2
What about 4D images?
#77
miykael
closed
5 years ago
3
Rename 'volume' to 'volume_mm' to clarify unit
#76
miykael
closed
5 years ago
2
Better error handling for when stats image is empty after thresholding
#75
miykael
closed
5 years ago
1
Using this to label something other than a stat image
#74
saigerutherford
closed
5 years ago
9
ENH: Add default atlases
#73
miykael
closed
5 years ago
3
MNI152 overlay of atlases
#72
miykael
closed
5 years ago
5
ENH: Adds license message on first import
#71
rmarkello
closed
5 years ago
5
WIP, ENH: Adds `queryatlas` command for coordinates of interest
#70
rmarkello
closed
5 years ago
6
ENH: doc fixes and changed default files to have atlasreader as prefix
#69
danjgale
closed
5 years ago
5
ENH: Switch default filename to atlasreader and adjust relevant documentation
#68
danjgale
closed
5 years ago
1
Atlas and template revision
#67
miykael
closed
5 years ago
10
Initiates paper for Journal of Open Source Software (JOSS)
#66
miykael
closed
5 years ago
9
FIX: Fixes error when provided statmaps contains no clusters
#65
rmarkello
closed
5 years ago
6
ENH: Fixes float format in CSV output
#64
rmarkello
closed
5 years ago
4
REF: Cluster extent not optional
#63
rmarkello
closed
5 years ago
2
Do you know app.codacy.com?
#62
miykael
closed
5 years ago
4
Cluster extent parameter seems to be broken
#61
miykael
closed
5 years ago
1
Add talairach atlas
#60
miykael
closed
5 years ago
14
ENH: add default text to cli help text
#59
miykael
closed
5 years ago
2
Correct cluster reader
#58
miykael
closed
5 years ago
3
Ideas for other atlases?
#57
miykael
opened
5 years ago
8
Test atlasreader with different voxel resolutions
#56
miykael
closed
5 years ago
2
ENH: orders clusters by cluster size
#55
miykael
closed
5 years ago
4
ENH: sets symmetric_cbar to false
#54
miykael
closed
5 years ago
5
Duplication of atlas names in cli help text
#53
miykael
closed
5 years ago
1
Should atlasreader CLI include defaults in the help message?
#52
miykael
closed
5 years ago
0
fix pandas df output
#51
PeerHerholz
closed
6 years ago
1
Additional plotting options added to create_ouput
#50
danjgale
closed
6 years ago
6
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