monarch-initiative koza issues

monarch-initiative / koza

Data transformation framework for LinkML data models

https://koza.monarchinitiative.org/

BSD 3-Clause "New" or "Revised" License

47 stars 4 forks source link

issues

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Added changes to make row_filter 'inlist' function give better results on common use cases.

#146 DnlRKorn closed 1 day ago
0
Potentially undesired behavior with "in" filter in row_filter.py

#145 DnlRKorn opened 5 days ago
1
Koza doesn't play nicely with generators

#144 DnlRKorn opened 5 days ago
0
First row drops when ingesting with Koza (at least in some cases)

#143 DnlRKorn closed 5 days ago
1
Update source.py _get_row to help with readability.

#142 DnlRKorn closed 1 day ago
0
Fixed truthiness error that made the tsv writer ignore zero values

#141 kevinschaper closed 2 weeks ago
0
Add support for multiple writers

#140 kevinschaper opened 1 month ago
10
Add koza split cli command to split up a kgx file based on field values

#139 kevinschaper opened 1 month ago
2
Add in flags which enable creation of nodes grouped by source

#138 DnlRKorn opened 1 month ago
3
Allow external setter alternatives to `transform.yaml`

#137 hrshdhgd opened 1 month ago
2
Update docs to reflect name change for import

#136 caufieldjh opened 3 months ago
0
Consider adding ability to generate node/edge count reports

#135 glass-ships opened 3 months ago
0
Add dynamic versioning via releases

#134 glass-ships closed 3 months ago
0
Update docs, other changes for cookiecutter usage

#133 glass-ships closed 3 months ago
0
Make necessary changes for modular ingests

#132 glass-ships closed 3 months ago
0
Source Config: Metadata - Revisit `DatasetDescription` fields

#131 glass-ships opened 4 months ago
1
Source: log filtered rows during _get_row()

#130 glass-ships opened 4 months ago
0
Curie Cleaner: Mappings should be in a yaml somewhere?

#129 glass-ships opened 4 months ago
2
New command: Create a koza project?

#128 glass-ships opened 4 months ago
0
Source Config: Better exception message during field map creation

#127 glass-ships opened 4 months ago
0
Source Config: Try type-coercing if filter code

#126 glass-ships opened 4 months ago
0
Source Config: Exception check when attempting to load metadata file

#125 glass-ships opened 4 months ago
0
Source Config: Concatenate files and file_archive?

#124 glass-ships opened 4 months ago
0
Source Config: Constrain id to be a curie?

#123 glass-ships opened 4 months ago
0
CSV Reader: Handle varying line lengths

#122 glass-ships opened 4 months ago
2
CSV Reader: Handle delimiter being more than 1 character

#121 glass-ships opened 4 months ago
0
Implement XML Reader

#120 glass-ships opened 4 months ago
0
Update deprecated import for pydantic.Validation

#119 glass-ships closed 4 months ago
0
Current `sssom` pin does not install versions compatible with recent oaklib

#118 caufieldjh closed 8 months ago
3
add header prefix config field

#117 glass-ships closed 8 months ago
0
Implement Zip decompression

#116 glass-ships closed 9 months ago
0
Update validation

#115 glass-ships closed 9 months ago
0
Expand SSSOM Config to include narrow and broad matches

#114 glass-ships opened 10 months ago
0
Clarify examples

#113 glass-ships opened 10 months ago
0
Update to Pydantic v2

#112 glass-ships closed 9 months ago
1
Update to Pydantic v2

#111 glass-ships closed 9 months ago
1
Produce friendlier error from csv_reader on missing column

#110 caufieldjh closed 10 months ago
1
adding sssom support

#109 glass-ships closed 10 months ago
6
Add SSSOM sssupport

#108 kevinschaper closed 10 months ago
7
Relax dependencies to get along with the latest kgx release

#107 kevinschaper closed 1 year ago
0
Logging

#106 glass-ships closed 1 year ago
1
QoL updates

#105 glass-ships closed 1 year ago
0
Metadata.yaml opened as TextIOWrapper rather than a str

#104 hrshdhgd closed 1 year ago
0
`**yaml.safe_load(`string-path`)` will not load the YAML file.

#103 hrshdhgd closed 1 year ago
1
Generate new ingests from templates

#102 kevinschaper opened 1 year ago
0
Add cli & docstrings documentation

#101 kevinschaper closed 1 year ago
2
Upgrade typer to 0.7, no longer needs to be locked lower

#100 kevinschaper closed 1 year ago
0
update linkml-validator, bug has been fixed

#99 glass-ships closed 1 year ago
0
Further QoL updates to io modules

#98 glass-ships closed 1 year ago
0
General QoL updates (WIP)

#97 glass-ships closed 1 year ago
1