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monarch-initiative
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koza
Data transformation framework for LinkML data models
https://koza.monarchinitiative.org/
BSD 3-Clause "New" or "Revised" License
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Added changes to make row_filter 'inlist' function give better results on common use cases.
#146
DnlRKorn
closed
1 day ago
0
Potentially undesired behavior with "in" filter in row_filter.py
#145
DnlRKorn
opened
5 days ago
1
Koza doesn't play nicely with generators
#144
DnlRKorn
opened
5 days ago
0
First row drops when ingesting with Koza (at least in some cases)
#143
DnlRKorn
closed
5 days ago
1
Update source.py _get_row to help with readability.
#142
DnlRKorn
closed
1 day ago
0
Fixed truthiness error that made the tsv writer ignore zero values
#141
kevinschaper
closed
2 weeks ago
0
Add support for multiple writers
#140
kevinschaper
opened
1 month ago
10
Add koza split cli command to split up a kgx file based on field values
#139
kevinschaper
opened
1 month ago
2
Add in flags which enable creation of nodes grouped by source
#138
DnlRKorn
opened
1 month ago
3
Allow external setter alternatives to `transform.yaml`
#137
hrshdhgd
opened
1 month ago
2
Update docs to reflect name change for import
#136
caufieldjh
opened
3 months ago
0
Consider adding ability to generate node/edge count reports
#135
glass-ships
opened
3 months ago
0
Add dynamic versioning via releases
#134
glass-ships
closed
3 months ago
0
Update docs, other changes for cookiecutter usage
#133
glass-ships
closed
3 months ago
0
Make necessary changes for modular ingests
#132
glass-ships
closed
3 months ago
0
Source Config: Metadata - Revisit `DatasetDescription` fields
#131
glass-ships
opened
4 months ago
1
Source: log filtered rows during _get_row()
#130
glass-ships
opened
4 months ago
0
Curie Cleaner: Mappings should be in a yaml somewhere?
#129
glass-ships
opened
4 months ago
2
New command: Create a koza project?
#128
glass-ships
opened
4 months ago
0
Source Config: Better exception message during field map creation
#127
glass-ships
opened
4 months ago
0
Source Config: Try type-coercing if filter code
#126
glass-ships
opened
4 months ago
0
Source Config: Exception check when attempting to load metadata file
#125
glass-ships
opened
4 months ago
0
Source Config: Concatenate files and file_archive?
#124
glass-ships
opened
4 months ago
0
Source Config: Constrain id to be a curie?
#123
glass-ships
opened
4 months ago
0
CSV Reader: Handle varying line lengths
#122
glass-ships
opened
4 months ago
2
CSV Reader: Handle delimiter being more than 1 character
#121
glass-ships
opened
4 months ago
0
Implement XML Reader
#120
glass-ships
opened
4 months ago
0
Update deprecated import for pydantic.Validation
#119
glass-ships
closed
4 months ago
0
Current `sssom` pin does not install versions compatible with recent oaklib
#118
caufieldjh
closed
8 months ago
3
add header prefix config field
#117
glass-ships
closed
8 months ago
0
Implement Zip decompression
#116
glass-ships
closed
9 months ago
0
Update validation
#115
glass-ships
closed
9 months ago
0
Expand SSSOM Config to include narrow and broad matches
#114
glass-ships
opened
10 months ago
0
Clarify examples
#113
glass-ships
opened
10 months ago
0
Update to Pydantic v2
#112
glass-ships
closed
9 months ago
1
Update to Pydantic v2
#111
glass-ships
closed
9 months ago
1
Produce friendlier error from csv_reader on missing column
#110
caufieldjh
closed
10 months ago
1
adding sssom support
#109
glass-ships
closed
10 months ago
6
Add SSSOM sssupport
#108
kevinschaper
closed
10 months ago
7
Relax dependencies to get along with the latest kgx release
#107
kevinschaper
closed
1 year ago
0
Logging
#106
glass-ships
closed
1 year ago
1
QoL updates
#105
glass-ships
closed
1 year ago
0
Metadata.yaml opened as TextIOWrapper rather than a str
#104
hrshdhgd
closed
1 year ago
0
`**yaml.safe_load(`string-path`)` will not load the YAML file.
#103
hrshdhgd
closed
1 year ago
1
Generate new ingests from templates
#102
kevinschaper
opened
1 year ago
0
Add cli & docstrings documentation
#101
kevinschaper
closed
1 year ago
2
Upgrade typer to 0.7, no longer needs to be locked lower
#100
kevinschaper
closed
1 year ago
0
update linkml-validator, bug has been fixed
#99
glass-ships
closed
1 year ago
0
Further QoL updates to io modules
#98
glass-ships
closed
1 year ago
0
General QoL updates (WIP)
#97
glass-ships
closed
1 year ago
1
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