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monashmicroimaging
/
podocytes
GNU General Public License v3.0
2
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Travis CI has changed their pricing structure for open source projects
#43
GenevieveBuckley
opened
3 years ago
0
save label images so this is not a black-box operation
#42
VolkerH
opened
5 years ago
0
glomuleri that touch the image boundary are not exluded
#41
VolkerH
opened
5 years ago
0
Use versioneer to manage release version numbers
#40
GenevieveBuckley
opened
5 years ago
0
More pytest unit tests
#39
GenevieveBuckley
opened
5 years ago
0
Refactor podo
#38
GenevieveBuckley
closed
5 years ago
2
Figuring out how to bundle the JVM
#37
jni
opened
5 years ago
0
Setup Travis-CI build with conda
#36
GenevieveBuckley
closed
5 years ago
0
Update requirements with conda and environment.yml
#35
GenevieveBuckley
closed
5 years ago
0
Screenshots and gifs for README.md
#34
GenevieveBuckley
closed
5 years ago
2
Error handling to recover from corrupt or missing metadata
#33
GenevieveBuckley
opened
5 years ago
2
Create _version.py file to track version numbers of podo, loci_tools.jar, etc. in a central place
#32
GenevieveBuckley
closed
5 years ago
3
Download loci_tools jar and package it with the app
#31
jni
closed
5 years ago
5
Could write output csv directly to file
#30
GenevieveBuckley
opened
5 years ago
0
Bugfix for issue 26 - pandas concat does not like being passed an empty list
#29
GenevieveBuckley
closed
5 years ago
1
Error caused by improper packaging
#28
GenevieveBuckley
closed
5 years ago
8
Log file needs to report which version of the Podo program was used.
#27
GenevieveBuckley
closed
5 years ago
2
Need to check list of dataframes is not empty before pandas concatenation
#26
GenevieveBuckley
closed
5 years ago
1
Safari download of Podo executable erroneously adds a .dms extension to file
#25
GenevieveBuckley
closed
5 years ago
1
Minor code tidying
#24
GenevieveBuckley
closed
5 years ago
5
Podo 0.1.0-alpha
#23
GenevieveBuckley
closed
6 years ago
0
Error writing log file (possible issue related to spaces in directory path)
#22
GenevieveBuckley
closed
5 years ago
3
Need to filter out hidden files ("not a valid Leica LIF file")
#21
GenevieveBuckley
closed
5 years ago
4
Validate branch
#20
GenevieveBuckley
closed
6 years ago
0
Add user input to specify filetype (not just assuming .lif files every time)
#19
GenevieveBuckley
closed
6 years ago
1
User input arguments - write their values to output excel sheet
#18
GenevieveBuckley
opened
6 years ago
4
App packaging issue: libc++.1.dylib not found
#17
GenevieveBuckley
closed
6 years ago
4
Separate dependency installs needed for Java legacy runtime SE 6, and the Java development kit
#16
GenevieveBuckley
closed
6 years ago
1
pims.api.UnknownFormatError: All handlers returned exceptions:
#15
GenevieveBuckley
closed
6 years ago
3
Mac Yosemite error: argument glomeruli_channel_number: invalid int value: 'Plus'
#14
GenevieveBuckley
closed
6 years ago
7
Functional podo app for Mac
#13
GenevieveBuckley
closed
6 years ago
0
Retrieve the units for physical pixel size from image metadata
#12
GenevieveBuckley
opened
6 years ago
1
Bundle loci_tools.jar into the app build
#11
GenevieveBuckley
closed
5 years ago
4
Eliminate warning "No module named 'tifffile._tifffile'"
#10
GenevieveBuckley
closed
6 years ago
1
Write regionprops attributes major_axis_length and minor_axis_length to output csv
#9
GenevieveBuckley
opened
6 years ago
0
Failure to start JavaVM with mac build of Podo.app (python-bioformats & javabridge build)
#8
GenevieveBuckley
closed
6 years ago
4
Use pims (with jpype) instead of python-bioformats and javabridge
#7
GenevieveBuckley
closed
6 years ago
1
Podo executable icon left in Mac taskbar after Gooey window is closed
#6
GenevieveBuckley
closed
6 years ago
4
TO DO: Include 'podocyte density' in csv output
#5
GenevieveBuckley
closed
6 years ago
1
Process images
#4
GenevieveBuckley
closed
6 years ago
1
Packaging - MacOS build
#3
GenevieveBuckley
closed
6 years ago
0
lifio metadata parsing now includes spatial dimension units
#2
GenevieveBuckley
closed
6 years ago
1
Extend lifio
#1
GenevieveBuckley
closed
6 years ago
0