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morinlab
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GAMBLR.viz
Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R
https://morinlab.github.io/GAMBLR.viz/
MIT License
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pretty_lollipop_plot.R update
#64
Atlantis-Real
opened
3 days ago
0
bug fix: handling of custom colors for numeric annotations
#63
Kdreval
closed
2 weeks ago
0
handling of custom colors for numeric annotations
#62
Kdreval
closed
2 weeks ago
1
Put ashm_multi_rainbow_plot where it works
#61
rdmorin
opened
3 months ago
0
Remove ssm_to_proteinpaint (moved to GAMBLR.utils)
#60
vladimirsouza
closed
4 months ago
0
Addressing README and prettyOncoplot issues
#59
Kdreval
closed
4 months ago
1
`prettyOncoplot` bugs
#58
Kdreval
closed
4 months ago
0
README needs update
#57
Kdreval
closed
4 months ago
0
Develop ggplot2-implemented lollipop plots
#56
Kdreval
opened
4 months ago
0
Dependency cleanup and setting up actions
#55
Kdreval
closed
4 months ago
0
drop plotly dependency
#54
Kdreval
closed
4 months ago
0
drop cowplot dependency
#53
Kdreval
closed
4 months ago
0
drop reshape2 dependency
#52
Kdreval
closed
4 months ago
0
setup github actions for this package
#51
Kdreval
closed
4 months ago
0
Ensure viz passes the devtools check
#50
Kdreval
closed
4 months ago
1
error in `prettyCoOncoplot`
#49
Kdreval
closed
4 months ago
1
Website/tutorials for GAMBLR.viz
#48
Kdreval
closed
4 months ago
1
Bug fix: Dropping samples with NA values in metadataColumns
#47
lkhilton
closed
4 months ago
0
`prettyOncoplot` is missing a step to assign POS/NEG colours
#46
lkhilton
closed
5 months ago
7
Error in `prettyOncoplot`
#45
vladimirsouza
closed
5 months ago
1
Bug fixes
#44
Kdreval
closed
5 months ago
2
`heatmap_mutation_frequency_bin` lost rotation of the column title
#43
Kdreval
closed
5 months ago
1
Add internal call to prettyOncoplot to convert NA metadata values to literal "NA" string
#42
Kdreval
closed
5 months ago
5
`heatmap_mutation_frequency_bin` shows pathology even when not specified
#41
kmcoyle
closed
4 months ago
1
cleanup: remnants of ggsci cleanup
#40
Kdreval
closed
5 months ago
0
remove ggsci dependency from Description
#39
rdmorin
closed
5 months ago
1
remove ggsci requirement
#38
rdmorin
closed
5 months ago
0
bug fix: resolve function conflicts
#37
Kdreval
closed
6 months ago
2
bug fix: keep only relevant annotations in prettyOncoplot
#36
Kdreval
closed
6 months ago
0
The annotation shows values not present in the data
#35
Kdreval
closed
6 months ago
1
Fixed bug & added hg38 compatibility
#34
kmcoyle
closed
6 months ago
0
bug fix: add source to desctiption
#33
Kdreval
closed
6 months ago
0
ashm_multi_rainbow_plot doesn't have option for genome projection
#32
kmcoyle
closed
6 months ago
1
cleanup: define dependency usage place and avoid import conflicts
#31
Kdreval
closed
7 months ago
0
pr transfer: prettyRainfallPlot update
#30
Kdreval
closed
7 months ago
5
Resolving GAMBLR.viz issues
#29
Kdreval
closed
7 months ago
4
hide_annotations still shows metadata track in prettyOncoplot
#28
Kdreval
closed
7 months ago
2
keepSampleOrder in prettyOncoplot is ignored
#27
Kdreval
closed
7 months ago
1
PrettyRainFallPlot Improvements
#26
mattssca
closed
7 months ago
0
Fix function code and examples
#25
vladimirsouza
closed
7 months ago
3
`prettyCoOncoplot` isn't supported by `prettyOncoplot` after maftools dependency has been removed from the latter
#24
vladimirsouza
closed
7 months ago
2
Parameters missing in `GAMBLR.data::calc_mutation_frequency_bin_regions`
#23
vladimirsouza
opened
8 months ago
0
Fancy Plot Updates
#22
mattssca
closed
8 months ago
11
Add ssm_to_proteinpaint function
#21
vladimirsouza
closed
7 months ago
2
`heatmap_mutation_frequency_bin` is not used in its examples
#20
vladimirsouza
opened
8 months ago
1
Function import tags vs. in-code package prefixing
#19
mattssca
opened
8 months ago
1
`fancy_v_count` doesn't work when GAMBLR.results is loaded
#18
vladimirsouza
closed
7 months ago
2
Switching from maftools dependency to GAMBLR.helpers in prettyOncoplot
#17
Kdreval
closed
8 months ago
2
Optionally use raw SVs in prettyRainfallPlot
#16
Kdreval
closed
7 months ago
2
prettyRainfallPlot does not respect the projection whet returning SVs
#15
Kdreval
closed
7 months ago
1
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