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mskilab-org
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dryclean
Irons out wrinkles in noisy coverage data using robust PCA
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reports dryclean in read count units and input signal retained in outputs
#35
jrafailov
closed
3 weeks ago
0
start_wash_cycle function
#34
ZWael
closed
1 month ago
1
fixed testing
#33
sebastian-brylka
closed
7 months ago
0
updated monster pon in readme
#32
sebastian-brylka
closed
7 months ago
0
Issue with pon.binsize
#31
hraeder41
closed
7 months ago
6
more robust approach to mismatched bin number
#30
sebastian-brylka
closed
8 months ago
0
changed centered to center
#29
sebastian-brylka
closed
8 months ago
0
fixed tests
#28
sebastian-brylka
closed
9 months ago
0
fixed centering
#27
sebastian-brylka
closed
9 months ago
0
fixed inconsistency with original dryclean
#26
sebastian-brylka
closed
10 months ago
0
updated cli files
#25
sebastian-brylka
closed
10 months ago
0
Memory mindful patch to PON generation
#24
jrafailov
closed
10 months ago
1
fixed rebinning problem + added masking
#23
sebastian-brylka
closed
10 months ago
1
fixed rebin issue
#22
sebastian-brylka
closed
11 months ago
0
uncommented dryclean library in CLI
#21
sebastian-brylka
closed
11 months ago
0
most recent changes
#20
sebastian-brylka
closed
11 months ago
4
cbs + cli changes
#19
sebastian-brylka
closed
11 months ago
0
updated tutorial + small changes
#18
sebastian-brylka
closed
11 months ago
0
fixed -h flag in drcln
#17
sebastian-brylka
closed
11 months ago
0
Sb dev
#16
sebastian-brylka
closed
11 months ago
0
Objectifying dryclean
#15
sebastian-brylka
closed
1 year ago
0
Drycleaned fragCounter input for JaBbA causes drop of SVs during edge selection
#14
pblaney
opened
1 year ago
1
prepare_detergent failing when using all samples
#13
pblaney
opened
1 year ago
2
could not find function "identify_germline"
#12
Bio-LiHe
opened
1 year ago
1
Zc dev
#11
zining01
closed
2 years ago
1
add parallel due to mclapply
#10
zining01
closed
2 years ago
0
Zc dev
#9
zining01
closed
2 years ago
0
"Error in m.vec - s : non-conformable arrays" when running the tutorial
#8
tinyheero
closed
2 years ago
3
Remove hard coding of chromosome names
#7
sc13-bioinf
closed
2 years ago
1
Update re: fragCounter
#6
ShaiberAlon
closed
3 years ago
0
added PAR for hg38 and fixed prepare_detergent so that it could accept files with "chr" prefix
#5
ShaiberAlon
closed
3 years ago
0
apply dryclean to other ASCN algoritms
#4
jinghu23
closed
2 years ago
2
Error in readRDS(germline.filter) : bad 'file' argument
#3
tlesluyes
closed
4 years ago
1
na.omit wiping out data.table
#2
tlesluyes
closed
4 years ago
8
Typo in tutorial
#1
tlesluyes
closed
4 years ago
1