nanoporetech dorado issues

nanoporetech / dorado

Oxford Nanopore's Basecaller

https://nanoporetech.com/

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issues

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Any Duplex Models for R9.4.1

#733 StephDC closed 2 months ago
4
Combine modified bam files rather than re-basecalling

#732 samuelmontgomery closed 3 months ago
4
fastq encoding

#731 Andreas-Bio closed 3 months ago
2
very basic question, not an issue

#730 mocherry closed 3 months ago
3
No supported chemistry for Flowcell on

#729 osvatic closed 3 months ago
4
If CXX=nvc++, then CMAKE_CXX_COMPILER_ID=NVHPC, so cmake fails

#728 aowenson-imm closed 3 months ago
5
Unclear interaction between `--modified-bases` `model` and automatic model selection

#727 awgymer closed 3 months ago
4
Fix typo in Warnings.cmake

#726 aowenson-imm closed 3 months ago
1
Error: failed to get stereo duplex models

#725 jadedavis5 closed 3 months ago
2
Drastically reduced basecalling performance with Dorado using RTX4090

#724 samuelmontgomery closed 1 month ago
13
ln: failed to access ‘libnvToolsExt.so’: Too many levels of symbolic links

#723 CRL-CHAR closed 1 month ago
4
Dorado Demultiplexing

#722 akholwad closed 3 months ago
1
Installing dorado

#721 CHoeeghGuldberg closed 3 months ago
6
Clarification on simplex reads which have duplex offsprings (dx:i:-1)

#720 sadikmz closed 2 months ago
2
dorado v0.6.0: selecting one GPU uses multiple GPUs according to nvidia-smi

#719 janpb closed 2 months ago
1
error building `v0.6.0`: dorado/splitter/myers.cpp

#718 sklages closed 3 months ago
4
DCS (DNA control sample) removal

#717 selmapichot closed 2 months ago
5
fasta file output

#716 JSluo888 closed 3 months ago
1
Preprocessing of raw signal data

#715 denisbeslic closed 3 months ago
1
Read splitting, what subcommand do it?

#714 Alteroldis closed 3 months ago
3
Command "conda install hcc::dorado" and error, "PackagesNotFoundError: The following packages are not available from current channels:"

#713 HyojeenLee closed 2 months ago
2
Dorado Alignment circular sequences

#712 Macdot3 closed 3 months ago
2
New version of MinKNOW stuck at 99% completion of basecalling step

#711 VahidJavaran opened 3 months ago
6
--Device flag specifications

#710 jadeaver closed 3 months ago
2
Dorado Read Splitting Logic is broken (for RNA2)

#709 patbohn opened 3 months ago
3
Duplex reads longer than the simplex parent(s)?

#708 minefield47 opened 3 months ago
9
lots of mutations found in direct RNA sequencing and dorado basecaller

#707 yul96 closed 3 months ago
3
NVidia RTX 6000 Ada generation benchmark

#706 tnn111 opened 3 months ago
16
Tuning parameters for GPU

#705 nadegeguiglielmoni closed 2 months ago
2
Does read splitting affect long expansion repeats?

#704 adbeggs closed 3 months ago
10
NVIDIA error for running dorado

#703 dfv closed 3 months ago
9
0.3.x generates reads 10% longer than 0.4.x and 0.5.x???

#702 ymcki opened 3 months ago
4
Reads number in bam/sam resluts

#701 guangzhaocs closed 3 months ago
1
Could Dorado provide the ployA start and end index?

#700 guangzhaocs closed 3 months ago
2
Query on MinKNOW's Qscore Filtering and Dorado's Standalone Version

#699 VahidJavaran closed 2 months ago
13
bacterial sequence for R9.4

#698 sahoo2000 closed 2 months ago
1
5mC calling in samples with other modified nucleotides

#697 JuandeBarba opened 3 months ago
1
RNA004 Trim question with Dorado v0.5.3

#696 Yang990-sys closed 2 months ago
6
Trouble running dorado on Macstudio

#695 sds22892 closed 1 month ago
1
No output

#694 VandaLovejoy closed 3 months ago
3
SM tag in bam file does not contain sample name

#693 jts opened 3 months ago
2
training data for R10.4, 4 and 5kHz?

#692 rainwala closed 3 months ago
1
dorado 0.3.x doesn't support newer methylation models?

#691 ymcki closed 3 months ago
3
Troubleshooting Demultiplexing Consistency in Multiplexed Libraries

#690 VahidJavaran closed 3 months ago
7
m6A RNA004 models

#689 dweemx closed 2 months ago
1
Do you have any suggestion on getting some summary QC on mapped bam file?

#688 sidi-yang closed 3 months ago
4
Discrepancies between actual reads and polyA tail estimation

#687 ChristopherAdelmann opened 3 months ago
1
Interpretation of MM:Z:A+a? tag from m6A basecaller model

#686 sarah-ku closed 3 months ago
2
Manually select simplex and stereo models for duplex basecalling

#685 pclavell closed 3 months ago
1
CPP equivalent for ont-pyguppy-client-lib

#684 maximilianmordig closed 2 months ago
1

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