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nanoporetech
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dorado
Oxford Nanopore's Basecaller
https://nanoporetech.com/
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NVidia RTX 6000 Ada generation benchmark
#706
tnn111
opened
3 months ago
16
Tuning parameters for GPU
#705
nadegeguiglielmoni
closed
2 months ago
2
Does read splitting affect long expansion repeats?
#704
adbeggs
closed
3 months ago
10
NVIDIA error for running dorado
#703
dfv
closed
3 months ago
9
0.3.x generates reads 10% longer than 0.4.x and 0.5.x???
#702
ymcki
opened
4 months ago
4
Reads number in bam/sam resluts
#701
guangzhaocs
closed
4 months ago
1
Could Dorado provide the ployA start and end index?
#700
guangzhaocs
closed
4 months ago
2
Query on MinKNOW's Qscore Filtering and Dorado's Standalone Version
#699
VahidJavaran
closed
2 months ago
13
bacterial sequence for R9.4
#698
sahoo2000
closed
2 months ago
1
5mC calling in samples with other modified nucleotides
#697
JuandeBarba
opened
4 months ago
1
RNA004 Trim question with Dorado v0.5.3
#696
Yang990-sys
closed
2 months ago
6
Trouble running dorado on Macstudio
#695
sds22892
closed
2 months ago
1
No output
#694
VandaLovejoy
closed
4 months ago
3
SM tag in bam file does not contain sample name
#693
jts
opened
4 months ago
2
training data for R10.4, 4 and 5kHz?
#692
rainwala
closed
4 months ago
1
dorado 0.3.x doesn't support newer methylation models?
#691
ymcki
closed
4 months ago
3
Troubleshooting Demultiplexing Consistency in Multiplexed Libraries
#690
VahidJavaran
closed
4 months ago
7
m6A RNA004 models
#689
dweemx
closed
2 months ago
1
Do you have any suggestion on getting some summary QC on mapped bam file?
#688
sidi-yang
closed
4 months ago
4
Discrepancies between actual reads and polyA tail estimation
#687
ChristopherAdelmann
opened
4 months ago
1
Interpretation of MM:Z:A+a? tag from m6A basecaller model
#686
sarah-ku
closed
3 months ago
2
Manually select simplex and stereo models for duplex basecalling
#685
pclavell
closed
4 months ago
1
CPP equivalent for ont-pyguppy-client-lib
#684
maximilianmordig
closed
2 months ago
1
PCR primers trimming mechanism in Dorado duplex calling
#683
ErminZ
closed
2 months ago
3
Summary file for custom barcodes
#682
CGD-Helix
closed
4 months ago
2
About model complex
#681
Yang990-sys
opened
4 months ago
4
Can TensorRT bring greater performance improvements?
#680
keithyin
closed
4 months ago
1
Duplex basecalling without cutting/trimming adaptors
#679
pclavell
closed
4 months ago
3
All context 5mC model 5kHz in dorado
#678
jasmatth
closed
4 months ago
3
How does chimeric read splitting work and how to take advantage of additional adapters
#677
pclavell
opened
4 months ago
6
Unable to specify local copy of duplex model for dorado duplex
#676
johnstonmj
closed
4 months ago
2
no rule to make target '/usr/lib64/libcufft_statis_nocallback.a'
#675
DKTMPELRN
closed
2 months ago
5
samplesheet contains invalid column flow_cell_id
#674
timternetnet
closed
4 months ago
2
Dorado creates new reads?
#673
mbhall88
closed
4 months ago
3
Dorado does not resume properly and creates identical duplicate reads
#672
billytcl
closed
2 months ago
10
failed to get modbase info ... skipped: AUX data not found
#671
vetmohit89
closed
4 months ago
5
GpC methylation using dorado
#670
thachnguyen
closed
4 months ago
2
Low % basecalled, not using all GPU
#669
franztastic
closed
4 months ago
4
Methylation patterns
#668
Angelluigiguarnizo
closed
2 months ago
5
basecalled pod5/fast5
#667
GregorD96
closed
4 months ago
7
ROCm compatibility
#666
Ge0rges
closed
4 months ago
1
After --resume-from, the speed of basecalling dropped dramatically!!
#665
VahidJavaran
closed
4 months ago
4
Using Dorado with SQK-RBK114-24 with FLG114 flowcell?
#664
tchrisboles
closed
4 months ago
6
live basecalling on our cluster with ont_basecall_client and ont_dorado_server
#663
gerald2545
closed
4 months ago
4
Sample rate for model (4000) and data (3000) are not compatible
#662
mocherry
closed
4 months ago
6
dorado demux trimming behaviour
#661
phpeters
closed
4 months ago
2
6mA@v2 running much slower than 6mA@v1
#660
samuelmontgomery
closed
4 months ago
3
Number of classified reads significantly differ between ont-dorado-server and dorado standalone
#659
billytcl
closed
1 month ago
6
c10::Error on simplex basecalling
#658
cocvincent
closed
3 months ago
5
Why I had very low Duplex rate?
#657
sidi-yang
closed
4 months ago
8
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