nanoporetech dorado issues

nanoporetech / dorado

Oxford Nanopore's Basecaller

https://nanoporetech.com/

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issues

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fasta file output

#716 JSluo888 closed 5 months ago
1
Preprocessing of raw signal data

#715 denisbeslic closed 5 months ago
1
Read splitting, what subcommand do it?

#714 Alteroldis closed 5 months ago
3
Command "conda install hcc::dorado" and error, "PackagesNotFoundError: The following packages are not available from current channels:"

#713 HyojeenLee closed 4 months ago
2
Dorado Alignment circular sequences

#712 Macdot3 closed 5 months ago
2
New version of MinKNOW stuck at 99% completion of basecalling step

#711 VahidJavaran opened 5 months ago
6
--Device flag specifications

#710 jadeaver closed 5 months ago
2
Dorado Read Splitting Logic is broken (for RNA2)

#709 patbohn opened 5 months ago
3
Duplex reads longer than the simplex parent(s)?

#708 minefield47 opened 5 months ago
9
lots of mutations found in direct RNA sequencing and dorado basecaller

#707 yul96 closed 5 months ago
3
NVidia RTX 6000 Ada generation benchmark

#706 tnn111 opened 5 months ago
16
Tuning parameters for GPU

#705 nadegeguiglielmoni closed 4 months ago
2
Does read splitting affect long expansion repeats?

#704 adbeggs closed 5 months ago
10
NVIDIA error for running dorado

#703 dfv closed 5 months ago
9
0.3.x generates reads 10% longer than 0.4.x and 0.5.x???

#702 ymcki opened 5 months ago
4
Reads number in bam/sam resluts

#701 guangzhaocs closed 5 months ago
1
Could Dorado provide the ployA start and end index?

#700 guangzhaocs closed 5 months ago
2
Query on MinKNOW's Qscore Filtering and Dorado's Standalone Version

#699 VahidJavaran closed 4 months ago
13
bacterial sequence for R9.4

#698 sahoo2000 closed 4 months ago
1
5mC calling in samples with other modified nucleotides

#697 JuandeBarba opened 5 months ago
1
RNA004 Trim question with Dorado v0.5.3

#696 Yang990-sys closed 4 months ago
6
Trouble running dorado on Macstudio

#695 sds22892 closed 3 months ago
1
No output

#694 VandaLovejoy closed 5 months ago
3
SM tag in bam file does not contain sample name

#693 jts opened 5 months ago
2
training data for R10.4, 4 and 5kHz?

#692 rainwala closed 5 months ago
1
dorado 0.3.x doesn't support newer methylation models?

#691 ymcki closed 5 months ago
3
Troubleshooting Demultiplexing Consistency in Multiplexed Libraries

#690 VahidJavaran closed 5 months ago
7
m6A RNA004 models

#689 dweemx closed 4 months ago
1
Do you have any suggestion on getting some summary QC on mapped bam file?

#688 sidi-yang closed 5 months ago
4
Discrepancies between actual reads and polyA tail estimation

#687 ChristopherAdelmann opened 5 months ago
1
Interpretation of MM:Z:A+a? tag from m6A basecaller model

#686 sarah-ku closed 5 months ago
2
Manually select simplex and stereo models for duplex basecalling

#685 pclavell closed 5 months ago
1
CPP equivalent for ont-pyguppy-client-lib

#684 maximilianmordig closed 4 months ago
1
PCR primers trimming mechanism in Dorado duplex calling

#683 ErminZ closed 4 months ago
3
Summary file for custom barcodes

#682 CGD-Helix closed 5 months ago
2
About model complex

#681 Yang990-sys opened 5 months ago
4
Can TensorRT bring greater performance improvements?

#680 keithyin closed 5 months ago
1
Duplex basecalling without cutting/trimming adaptors

#679 pclavell closed 5 months ago
3
All context 5mC model 5kHz in dorado

#678 jasmatth closed 5 months ago
3
How does chimeric read splitting work and how to take advantage of additional adapters

#677 pclavell opened 6 months ago
6
Unable to specify local copy of duplex model for dorado duplex

#676 johnstonmj closed 6 months ago
2
no rule to make target '/usr/lib64/libcufft_statis_nocallback.a'

#675 DKTMPELRN closed 3 months ago
5
samplesheet contains invalid column flow_cell_id

#674 timternetnet closed 6 months ago
2
Dorado creates new reads?

#673 mbhall88 closed 6 months ago
3
Dorado does not resume properly and creates identical duplicate reads

#672 billytcl closed 4 months ago
10
failed to get modbase info ... skipped: AUX data not found

#671 vetmohit89 closed 5 months ago
5
GpC methylation using dorado

#670 thachnguyen closed 6 months ago
2
Low % basecalled, not using all GPU

#669 franztastic closed 5 months ago
4
Methylation patterns

#668 Angelluigiguarnizo closed 3 months ago
5
basecalled pod5/fast5

#667 GregorD96 closed 6 months ago
7

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