nanoporetech ont_fast5_api issues

nanoporetech / ont_fast5_api

Oxford Nanopore Technologies fast5 API software

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issues

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Unable to copy object (file read failed) on parallel FS

#84 matzmz opened 6 months ago
0
fast5_compress error:

#83 sahoo2000 opened 10 months ago
0
compress_fast5 command

#82 senukobla opened 11 months ago
1
single_to_multi_fast5 do not collect all the single files if the input folder contains mixed types of fast5 files.

#81 Marjan-Hosseini opened 11 months ago
0
Directly cast dataset into desired type instead of using it as a cont…

#80 nileshpatra closed 2 months ago
1
similar API for pod5?

#79 assafgrw opened 1 year ago
2
demux_fast5: `python3.9(20125,0x7ff84e0ee640) malloc: *** error for object 0x1110417b0: pointer being freed was not allocated`

#78 richardstoeckl opened 1 year ago
0
error when converting single read to multi read

#77 Vsd1106 closed 1 year ago
1
demux_fast5 demultiplexing every single read by readID instead of barcode name

#76 Violeta-de-Anca closed 1 year ago
4
fast5_subset to take list of .fast5 files

#75 MustafaElshani closed 1 year ago
1
Some problem of multi_to_single_fast5

#74 Bin-Ma closed 1 year ago
6
WARNING:Fast5Filter:xxx reads not found!

#73 markme123 opened 2 years ago
8
the function get_latest_analysis fails after upgrading MinKNOW to version 21 and onward

#72 avielmiluz closed 2 years ago
6
compress_fast5 not compressing?

#71 mawa86 closed 2 years ago
2
The labels in the "end_reason" data type get lost when using compress_fast5

#70 hasindu2008 closed 2 years ago
7
multi_to_single_fast5 problem

#69 FerchoHQ closed 2 years ago
3
demultiplexing generates additional - folder

#68 Fatihlrcfs closed 2 years ago
3
subset obtained with fast5_subset does not work for guppy

#67 ndierckx closed 2 years ago
3
demux_fast5 resume list

#66 SkabbiVML opened 2 years ago
1
multi_to_multi_fast5

#65 nick-youngblut opened 2 years ago
2
vbz compression compatibility with guppy_basecaller

#64 nick-youngblut closed 2 years ago
2
Multi to single fast5 goes into sleep

#63 kaltinel closed 3 years ago
7
fast5_subset OSError

#62 ndierckx closed 3 years ago
4
Issues attempting to duplicate reads

#61 CodingKaiser closed 3 years ago
8
'demux_fast5' (and 'fast5_subset') for single read fast5s

#60 AAnnan closed 2 years ago
5
--filename_base behaves differently in 'fast5_subset'

#59 AAnnan opened 3 years ago
2
--sanitize can't be used with --in_place with compress_fast5

#58 mattloose closed 3 years ago
2
ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Unable to open file

#57 123chenshixin closed 3 years ago
1
filesize increased reconverting vbz compressed fast5 back to gzip compression

#56 biolene closed 3 years ago
13
multi_to_single_fast5 generated only 4000 single fast5

#55 Johnsonzcode closed 3 years ago
13
Guppy default modified base calling configuration file doesn't exist

#54 JayVaz18 closed 3 years ago
1
mounting error

#52 xj-Liang-Olga closed 3 years ago
2
fast5_subset failing mid-run

#51 irenenewton closed 3 years ago
6
fast5_subset is missing?

#50 kaykay202 closed 3 years ago
1
[M]: add tombo resquiggle

#49 loganylchen closed 3 years ago
5
Update LICENSE.txt URL schemes: http -> https

#48 thequicksort closed 3 years ago
1
Metadata from multifast5

#47 usamec opened 3 years ago
1
Error when running compress_fast5 but seems to complete

#46 callumparr closed 3 years ago
3
Question: subset by barcode

#45 JWDebler closed 3 years ago
10
Decompression

#44 jamez-eh closed 3 years ago
10
multi_to_single_fast5 hanging

#43 fbrennen closed 4 years ago
1
no space left on device [errno28]

#42 cyber-ux closed 4 years ago
9
multi_to_single_fast5 command give syntax error

#41 aman21392 closed 4 years ago
5
ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Could not convert Multi->Single for file type 'single-read' with path

#40 akk01 opened 4 years ago
4
Check if the Fast5 is multi-read or single-read

#39 akk01 closed 4 years ago
1
single_to_multi_fast5 compression is not working ?

#38 svennd closed 4 years ago
5
How to get info from fast5?

#37 renzilin closed 4 years ago
2
Can I subsample Nanopore fast5/fastq with this tool?

#36 jolespin closed 4 years ago
7
sequencing_summary.txt for fast5_subset output

#35 mmiladi closed 4 years ago
4
Decompress/repack from VBZ to GZIP or something option compatible with squiggle tools

#34 callumparr closed 4 years ago
6