nasa GeneLab_Data_Processing issues

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[Microarray] Add option to skip DE step during processing

#104 cyouh95 opened 1 day ago
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Amplicon 454 ion torrent Nextflow workflow

#103 olabiyi opened 1 week ago
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Amplicon Illumina Nextflow workflow

#102 olabiyi opened 1 week ago
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Metagenomics Illumina Nextflow workflow

#101 olabiyi opened 1 week ago
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[Microarray] Factor group column renaming issue when one factor is substring of another

#100 cyouh95 opened 2 weeks ago
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[Microarray] Assertion fails in GENERATE_SOFTWARE_TABLE when data files are not compressed

#99 cyouh95 opened 1 month ago
1
[Microarray Affymetrix] Processed data protocol

#98 cyouh95 opened 1 month ago
1
[Microarray] Unintentional renaming of columns causes issues later in selection of columns

#97 cyouh95 opened 1 month ago
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[Microarray] Issue combining dataframes using bind_rows() when getBM() returns no results

#96 cyouh95 opened 1 month ago
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Updates for issue #94

#95 bnovak32 closed 1 week ago
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[Methyl-Seq] Pipeline specifies incorrect input for deduplication step.

#94 bnovak32 opened 1 month ago
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Metagenomics Remove Human Reads

#93 kieranmbrown opened 1 month ago
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NF_MAAgilent1ch: Update workflow version from 1.0.2 to 1.0.3

#92 asaravia-butler closed 1 month ago
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NF_MAAffymetrix: Update workflow version from 1.0.3 to 1.0.4

#91 asaravia-butler closed 1 month ago
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NF_MAAffymetrix: Update workflow version from 1.0.3 to 1.0.4

#90 cyouh95 closed 1 month ago
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NF_MAAgilent1ch: Update workflow version from 1.0.2 to 1.0.3

#89 cyouh95 closed 1 month ago
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Updating to merge master branch updates

#88 asaravia-butler closed 2 months ago
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Updating to merge Master branch updates

#87 asaravia-butler closed 2 months ago
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[Microarray Affymetrix] Issue loading annotation package in read.celfiles() due to incomplete download

#86 cyouh95 closed 1 month ago
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[Microarray Agilent 1-channel] Generate processed data protocol

#85 cyouh95 opened 2 months ago
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[BulkRNASeq] Generate CSV of parsed metrics

#84 cyouh95 opened 2 months ago
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[BulkRNASeq] Combine MultiQC reports

#83 cyouh95 opened 2 months ago
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[Microarray] Issue creating cache directories in quarto render command for updated Nextflow version

#82 cyouh95 closed 1 month ago
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SW_AmpIllumina-B: --target documentation changes

#81 torres-alexis closed 3 months ago
1
NF Metagenomics RHR

#80 kieranmbrown closed 2 months ago
1
[Metagenomics Illumina] fix to single-end problem when running with new setup

#79 AstrobioMike opened 3 months ago
0
Issue-76-fix-add-szip-bundles

#78 bnovak32 closed 3 months ago
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Issue 76 metagenomics zipfiles

#77 bnovak32 closed 3 months ago
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[Metagenomics Illumina] Some datasets have too many files in the MAGs and bins folders

#76 bnovak32 opened 3 months ago
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DEV_NF_MAAffymetrix: DPPD typo fix

#75 torres-alexis closed 3 months ago
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Sync SW_AmpIllumina-B/CHANGELOG.md

#74 torres-alexis closed 3 months ago
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SW_AmpIllumina-B changelog update

#73 torres-alexis closed 3 months ago
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Sync SW_AmpIllumina-B GL-DPPD-7104-B.md

#72 torres-alexis closed 3 months ago
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SW_AmpIllumina-B: GL-DPPD-7104-B.md typo fixes

#71 torres-alexis closed 3 months ago
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SW_AmpIllumina-B: Assay suffix changes

#70 torres-alexis closed 3 months ago
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SW_AmpIllumina-B: Vis script readme updates, fixes

#69 torres-alexis closed 3 months ago
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SW_AmpIllumina-B Fixes

#68 torres-alexis closed 4 months ago
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SW_AmpIllumina-B integration

#67 torres-alexis closed 4 months ago
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SW-AmpIllumina-B optional visualizations updates

#66 torres-alexis closed 4 months ago
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NF_RCP-F_1.0.4, NF_MAAffymetrix_1.0.3, NF_MAAgilent1ch_1.0.2 release prep

#65 torres-alexis closed 4 months ago
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Microarray workflows integration

#64 asaravia-butler closed 4 months ago
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Microarray workflows integration

#63 torres-alexis closed 4 months ago
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[Metagenomics Illumina] explicitly setting humann3 reference db locations in rule

#62 AstrobioMike opened 4 months ago
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NF_RCP: Remove whitespace in by_docker_image.config

#61 torres-alexis closed 4 months ago
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NF_RCP-F_1.0.4

#60 torres-alexis closed 4 months ago
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Merging metagenomics branch with updated metagenomics workflow v2.0.4

#59 AstrobioMike closed 4 months ago
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SW_AmpIllumina-B: run_workflow.py changes

#58 torres-alexis closed 4 months ago
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NF_RCP-F 1.0.4

#57 torres-alexis closed 5 months ago
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Incorporation of SW_AmpIllumina-B

#56 torres-alexis closed 5 months ago
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Incorporation of SW_AmpIllumina-B

#55 torres-alexis closed 5 months ago
0