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nextstrain
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conda-base
Conda package build for nextstrain-base
https://anaconda.org/Nextstrain/nextstrain-base
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Newer Linux base systems (glibc version) required
#92
tsibley
opened
1 day ago
3
Add the SQLite CLI for `augur merge`
#91
tsibley
closed
21 hours ago
1
Surface installation failures with GitHub issues
#90
victorlin
closed
1 month ago
0
don't merge: experiment with regex in match spec
#89
corneliusroemer
opened
1 month ago
0
CI build failure / macOS 12 / libexpat
#88
jameshadfield
closed
1 month ago
1
Update lassa CI
#87
joverlee521
closed
1 month ago
0
Update avian-flu CI
#86
jameshadfield
closed
1 month ago
1
CI: Update test-pathogen-repo-ci
#85
joverlee521
closed
1 month ago
0
Open an issue on failure of scheduled installation check
#84
victorlin
closed
1 month ago
1
Run pathogen CI on multiple subdirs
#83
victorlin
opened
1 month ago
5
dev: Add comment about updating the installation workflow's schedule
#82
tsibley
closed
1 month ago
0
ENH: support linux-aarch64
#81
corneliusroemer
opened
1 month ago
1
feat: Make osx-arm64 version of conda-base
#80
corneliusroemer
opened
1 month ago
2
Undo temporary conda-build pin
#79
corneliusroemer
opened
1 month ago
0
Reenable zika/mpox pathogen repo ci
#78
corneliusroemer
closed
1 month ago
1
ENH: Support native osx-arm64 conda install
#77
corneliusroemer
opened
1 month ago
5
Minimum tsv-utils build number
#76
corneliusroemer
closed
2 months ago
1
tsv-utils raises error in new installation
#75
joverlee521
closed
2 months ago
11
Installation failing
#74
joverlee521
closed
2 months ago
3
Installation: Drop macos-11
#73
joverlee521
closed
2 months ago
1
Drop macos-11 from GH Action workflow
#72
joverlee521
closed
2 months ago
1
Add pathogen-embed as a first-party dependency
#71
huddlej
closed
2 months ago
0
Provide GNU coreutils in the runtime
#70
tsibley
closed
2 months ago
1
Set default shell
#69
victorlin
closed
3 months ago
0
Switch from boa → rattler-build
#68
tsibley
opened
3 months ago
0
Reference new CI target
#67
victorlin
closed
4 months ago
0
Fix CI
#66
victorlin
closed
4 months ago
0
Installation failing
#65
joverlee521
closed
4 months ago
3
dev: Test installation on macOS 13 and 14 too
#64
tsibley
closed
6 months ago
1
Unpin Biopython
#63
victorlin
closed
7 months ago
0
build(deps): bump actions/download-artifact from 3 to 4
#62
dependabot[bot]
closed
7 months ago
1
build(deps): bump actions/upload-artifact from 3 to 4
#61
dependabot[bot]
closed
7 months ago
1
build(deps): bump actions/checkout from 3 to 4
#60
dependabot[bot]
closed
7 months ago
1
Temporarily disable zika CI
#59
victorlin
closed
7 months ago
0
Update Micromamba install
#58
victorlin
closed
3 months ago
1
CI: Add cache for Micromamba installation
#57
victorlin
closed
7 months ago
2
CI: Transient failures during Micromamba installation
#56
victorlin
closed
3 months ago
5
Remove nextclade3 binary as it can be installed from bioconda
#55
corneliusroemer
closed
7 months ago
1
Transition nextclade 2->3
#54
corneliusroemer
closed
7 months ago
2
fix: pin pulp<2.8, required by snakemake
#53
corneliusroemer
closed
7 months ago
1
Update `nextclade3` to alpha.2
#52
corneliusroemer
closed
7 months ago
0
Pin Biopython 1.81
#51
victorlin
closed
8 months ago
1
Add nextclade3 via direct download
#50
victorlin
closed
8 months ago
1
Pin Snakemake to <8
#49
victorlin
closed
8 months ago
2
Add nextclade2
#48
victorlin
closed
7 months ago
4
Fix setup env
#47
victorlin
closed
9 months ago
2
CI: Rename and disable mpox build
#46
victorlin
closed
10 months ago
0
dev: Temporarily pin ruamel.yaml <0.18.0 to work around Boa's issue
#45
tsibley
closed
10 months ago
2
CI failing with `AttributeError: "safe_load()" has been removed`
#44
victorlin
closed
10 months ago
2
Unpin urllib3, pin anaconda-client>=1.12.0
#43
victorlin
closed
10 months ago
0
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