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nextstrain
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fauna
RethinkDB database to support real-time virus analysis
GNU Affero General Public License v3.0
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database dump
#59
phiweger
closed
6 years ago
3
Add command line arguments to `download_all.py`
#58
barneypotter24
closed
7 years ago
0
Remove fuzzy matching on vdb upload
#57
trvrb
closed
6 years ago
1
Docs update
#56
barneypotter24
closed
7 years ago
0
Improve downloading of assay_type selections
#55
trvrb
closed
7 years ago
0
Parse subtype from document field
#54
trvrb
closed
7 years ago
0
Improving parsing of upload_all arguments
#53
trvrb
closed
7 years ago
0
Improve command line interaction with upload_all
#52
trvrb
closed
7 years ago
0
TDB upload fails if subtype is absent
#51
trvrb
closed
7 years ago
0
Allow uploads of non-HI assay types.
#50
barneypotter24
opened
7 years ago
3
Retrieve GI numbers in batches of 2500 accessions
#49
trvrb
closed
7 years ago
0
Sort out why Texas/50 is being dropped
#48
trvrb
opened
7 years ago
1
Allow filtering of tdb downloads
#47
trvrb
closed
7 years ago
0
Docs pass for tdb
#46
trvrb
closed
7 years ago
1
Cdc titer
#45
barneypotter24
closed
7 years ago
2
Retrieve GI numbers in batches of 2500 accessions.
#44
sidneymbell
closed
7 years ago
2
Parameter modification
#43
smur232
closed
7 years ago
10
Set up of fauna for dengue.
#42
sidneymbell
closed
7 years ago
1
Incorporate geo source data from denv branch.
#41
sidneymbell
closed
7 years ago
3
Add script to handle upload of dengue data. Add some geo data.
#40
sidneymbell
closed
7 years ago
2
Error when updating Zika citations or locations
#39
trvrb
closed
7 years ago
4
Issue with flu update groupings
#38
trvrb
closed
7 years ago
2
Dates not downloading properly
#37
trvrb
closed
8 years ago
3
Timestamp bug
#36
chacalle
closed
8 years ago
2
Inclusion date
#35
trvrb
closed
8 years ago
11
Installing dependencies
#34
smur232
closed
8 years ago
3
Pull genbank files with Accession numbers
#33
chacalle
opened
8 years ago
12
Problem with GenBank GIs
#32
trvrb
closed
8 years ago
3
Subset download on server
#31
trvrb
closed
8 years ago
5
Match fields from tsv header
#30
trvrb
closed
8 years ago
10
NCBI email requirement
#29
trvrb
closed
8 years ago
1
Improve field updates
#28
trvrb
closed
8 years ago
14
More flexible field requirements
#27
trvrb
closed
8 years ago
2
Should separate concepts of 'table' and 'virus' in vdb
#26
trvrb
closed
8 years ago
2
Citation not updating
#25
trvrb
closed
8 years ago
2
When syncing, keep most recent version
#24
trvrb
closed
8 years ago
1
Replace date_modified with timestamp
#23
trvrb
closed
8 years ago
1
Entrez email bug
#22
trvrb
closed
8 years ago
2
default values and kwargs
#21
rneher
closed
8 years ago
6
Streamline download
#20
rneher
closed
8 years ago
0
Make lineage-specific tables in vdb
#19
trvrb
closed
8 years ago
1
Restore from backup
#18
trvrb
closed
8 years ago
2
Standardization of ferret id, passage, genetic group fields
#17
chacalle
closed
8 years ago
1
Improve parsing of strain names from serum columns
#16
chacalle
closed
8 years ago
1
Visualizing Sequence Information Fields in Chateau
#15
chacalle
closed
8 years ago
2
Automatic Uploading of Sequences from Genbank
#14
chacalle
closed
8 years ago
4
Strain name false mismatches
#13
trvrb
closed
8 years ago
5
Strain names with spaces
#12
trvrb
closed
8 years ago
1
Upload bug
#11
trvrb
closed
8 years ago
3
GISAID Upload Pipeline
#10
chacalle
closed
8 years ago
2
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