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nextstrain
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fauna
RethinkDB database to support real-time virus analysis
GNU Affero General Public License v3.0
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GitHub Action to lint Python code
#105
cclauss
closed
2 years ago
0
Upgrade to Python 3 and RethinkDB 2.4.8
#104
trvrb
closed
3 years ago
0
VIDRL flat file
#103
joverlee521
closed
3 years ago
0
Use print() function in both Python 2 and Python 3
#102
cclauss
closed
3 years ago
4
Fauna upload and download scripts for seasonal corona viruses
#101
kistlerk
opened
4 years ago
0
Geographic error?
#100
boristim66
closed
4 years ago
2
fauna doesn't work with rethinkdb 2.4
#99
rneher
opened
4 years ago
3
Bump urllib3 from 1.24.1 to 1.24.2
#98
dependabot[bot]
closed
4 years ago
0
Wip h9n2
#97
lmoncla
closed
4 years ago
0
Move date selection function
#96
barneypotter24
closed
4 years ago
0
Fauna installation fails for some users who don't run `npm install` inside of `/chateau`
#95
kairstenfay
closed
5 years ago
3
Added functionality for uploading avian flu sequences from the Influenza Research Database to fauna.
#94
lmoncla
closed
5 years ago
1
Added functionality for uploading avian flu sequences from the Influenza Research Database to fauna.
#93
lmoncla
closed
5 years ago
0
Fix imports from parent modules in vdb and tdb for python 3
#92
huddlej
closed
5 years ago
0
Crick 2018 update
#91
trvrb
closed
5 years ago
0
Fix parsing of VIDRL fluB tables
#90
barneypotter24
closed
5 years ago
1
Ease README.md upload directions by matching filename casing across repositories
#89
stevenweaver
closed
6 years ago
1
Match filename in command to match linked repository
#88
stevenweaver
closed
6 years ago
2
Migrate to pandas 0.17
#87
stevenweaver
closed
6 years ago
6
vdb/download.py: Let --fasta_fields take multiple values
#86
tsibley
closed
6 years ago
0
Declare dependencies with version ranges rather than single versions
#85
tsibley
closed
6 years ago
1
updated parser calls
#84
rneher
closed
6 years ago
1
argument parser in upload.py
#83
rneher
opened
6 years ago
3
VIDRL TDB
#82
trvrb
closed
6 years ago
1
fauna uploads fail in python 3 unicode error
#81
lmoncla
opened
6 years ago
1
Download multiple flu segments
#80
trvrb
closed
6 years ago
0
Include measles build
#79
trvrb
closed
6 years ago
0
Update and streamline mumps build
#78
trvrb
closed
6 years ago
7
Add script to concatenate all titers to one file tracking source/passage
#77
barneypotter24
closed
6 years ago
3
Annotate titer TSVs with source and passage
#76
huddlej
closed
6 years ago
0
Suggest using direct clinical sample sequence for MEX_CIENI551 Zika genome
#75
alliblk
opened
6 years ago
0
Piglets
#74
jameshadfield
closed
6 years ago
0
chateau submodule error
#73
jameshadfield
closed
6 years ago
2
implement caching for geo lookups
#72
jameshadfield
opened
6 years ago
1
Higher resolution sampling date available for Zika strain HN16
#71
alliblk
closed
6 years ago
1
What should the environment variables RETHINK_HOST and RETHINK_AUTH_KEY be set to?
#70
samyuktr
closed
6 years ago
1
Fix dengue author info
#69
trvrb
opened
6 years ago
0
unravel strain_to_doc calculation
#68
rneher
closed
6 years ago
2
update script adds journal & paper URL to sequences table
#67
jameshadfield
closed
6 years ago
1
Do not require subtype or define a default value
#66
huddlej
closed
6 years ago
0
Update download_all to work with segments
#65
trvrb
opened
7 years ago
2
Sort out what we want to use for geo regions
#64
trvrb
closed
6 years ago
4
Removed references to deprecated copy_data and augur_path parameters.
#63
huddlej
closed
7 years ago
1
Counts in HI strain files need to be properly summed
#62
trvrb
closed
7 years ago
0
Update regions
#61
sidneymbell
closed
7 years ago
1
error with npm run chateau
#60
j3tkd
closed
6 years ago
3
database dump
#59
phiweger
closed
6 years ago
3
Add command line arguments to `download_all.py`
#58
barneypotter24
closed
7 years ago
0
Remove fuzzy matching on vdb upload
#57
trvrb
closed
6 years ago
1
Docs update
#56
barneypotter24
closed
7 years ago
0
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