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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Error locating home in single-end analysis
#579
pehenrique
closed
1 year ago
5
Nf core template merge 2.8
#578
d4straub
closed
1 year ago
2
Add sintax
#577
jtangrot
closed
1 year ago
6
Important! Template update for nf-core/tools v2.8
#576
nf-core-bot
closed
1 year ago
0
Filter codon
#575
lokeshbio
closed
1 year ago
10
Add UNITE 9.0 databases
#574
prototaxites
closed
1 year ago
5
fix single end empty file handling
#573
d4straub
closed
1 year ago
1
Parser error for single-end data
#572
lch14forever
closed
1 year ago
2
Option to filter low-abundant ASVs before running QIIME2_ANCOM_ASV
#571
SergeWielhouwer
closed
1 year ago
6
nf-test-init-config-pipeline-minimal-tests-snaps
#570
sateeshperi
closed
1 year ago
5
Make header in overall_summary consistent
#569
jtangrot
closed
1 year ago
2
Filter COI ASV sequences based on their length and codons
#568
lokeshbio
closed
1 year ago
8
use phylogenetic placement output in qiime
#567
d4straub
closed
1 year ago
1
added description to --exclude_taxa param
#566
dariader
closed
1 year ago
1
Add more details on exclude taxa 559
#565
dariader
closed
1 year ago
0
Add phylogenetic placement
#564
d4straub
closed
1 year ago
1
add ref tax abbreviation to DADA2 output tables
#563
d4straub
closed
1 year ago
1
Phylogenetic placement part 2
#562
erikrikarddaniel
opened
1 year ago
0
Phylo placement part 1
#561
erikrikarddaniel
opened
1 year ago
0
Add classifier name and database name to output file names
#560
erikrikarddaniel
closed
1 year ago
1
Add more details on --exclude_taxa value taxonomy format
#559
Ste40
closed
1 year ago
2
Pipeline summary report
#558
tillenglert
closed
1 year ago
8
Feature/summary report
#557
tillenglert
closed
1 year ago
1
Filtering low read count samples during QC
#556
d4straub
closed
1 year ago
0
how did the pipeline filter the "filtered-table.qza"
#555
bark9299
closed
1 year ago
2
Let QIIME2 accept special symbols in taxonomy strings
#554
d4straub
closed
1 year ago
2
Fix empty barrnap output
#553
jtangrot
closed
1 year ago
4
Ampliseq fails during reannotation of ASVs
#552
pragermh
closed
1 year ago
9
Update version to 2.6.0dev
#551
d4straub
closed
1 year ago
6
Review suggestions
#550
d4straub
closed
1 year ago
2
Release 2.5.0
#549
d4straub
closed
1 year ago
5
change barrnap filtering
#548
d4straub
closed
1 year ago
1
ASV filtering with barrnap could be improved
#547
d4straub
closed
1 year ago
2
Prepare for release 2.4.2
#546
d4straub
closed
1 year ago
1
Fix addsh
#545
jtangrot
closed
1 year ago
2
Fix fasta input
#544
jtangrot
closed
1 year ago
15
bin/add_sh_to_taxonomy.py needs updating to match UNITE db files
#543
jtangrot
closed
1 year ago
5
Strange results with fasta input
#542
jtangrot
closed
1 year ago
9
Remove taxonomic adjustments
#541
d4straub
closed
1 year ago
2
module compilation error
#540
skose82
closed
1 year ago
7
COI accepted for SBDIexport
#539
jtangrot
closed
1 year ago
2
Sample filter
#538
d4straub
closed
1 year ago
2
Fix sbdi export
#537
jtangrot
closed
1 year ago
1
Samples with '-' in name get converted to '.' after dada2 steps
#536
davised
closed
1 year ago
13
Run barrnap with fasta
#535
erikrikarddaniel
closed
1 year ago
2
Add COIDB documentation
#534
d4straub
closed
1 year ago
2
Barrnap doesn't get called with fasta input
#533
erikrikarddaniel
closed
1 year ago
1
Pipeline finishes with no plots/analysis with qiime2
#532
skose82
closed
1 year ago
2
Update metadata documentation
#531
d4straub
closed
1 year ago
2
Fix conda packages
#530
d4straub
closed
1 year ago
2
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