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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Important! Template update for nf-core/tools v2.9
#607
nf-core-bot
closed
1 year ago
0
Error at process NFCORE_AMPLISEQ:AMPLISEQ:DADA2_QUALITY (FW)
#606
BCArg
closed
1 year ago
4
Sbdi pr2 v5
#605
jtangrot
closed
1 year ago
3
Release 2.6.1
#604
d4straub
closed
1 year ago
2
PREPARE: Release 2.6.1
#603
maxulysse
closed
1 year ago
2
bump-version-2.7.0dev
#602
d4straub
closed
1 year ago
2
Release 2.6.0
#601
d4straub
closed
1 year ago
3
bump-version
#600
d4straub
closed
1 year ago
2
PR2 exact species assignment now without taxa ending with sp.
#599
d4straub
closed
1 year ago
1
update workflow figure
#598
d4straub
closed
1 year ago
2
Change from file size to read counts as sample read threshold
#597
d4straub
closed
1 year ago
1
Add PR2 v5.0.0
#596
d4straub
closed
1 year ago
1
Restructure reporting of mindepth in QIIME2_DIVERSITY_CORE
#595
d4straub
closed
1 year ago
2
fix metadata documentation
#594
d4straub
closed
1 year ago
2
Strategy for PR2 species assignments
#593
andand
closed
1 year ago
7
Documentation error: "Metadata files are not required to have additional metadata columns"
#592
d4straub
closed
1 year ago
1
Update unite to version 9.0
#591
jtangrot
closed
1 year ago
6
Process `NFCORE_AMPLISEQ:AMPLISEQ:METADATA_ALL (Metadata.tsv)` terminated with an error exit status (126)
#590
Truongphi20
closed
1 year ago
2
QIIME2_DIVERSITY_CORE gaps in mindepth piecewise
#589
lam-c
closed
1 year ago
3
Use new PR2 release for 18S (PR2 version 5.0.0)
#588
andand
closed
1 year ago
2
The pipeline has been running and staying on the interface
#587
freemutation
closed
1 year ago
4
activate codon filter and use pandas instead of QIIME2 environment
#586
d4straub
closed
1 year ago
2
docker cutadapt file not found
#585
scheckley
closed
1 year ago
2
ERROR about NFCORE_AMPLISEQ:AMPLISEQ:PICRUST
#584
linshizuowei
closed
1 year ago
4
Bad file descriptor
#583
weber8thomas
closed
1 year ago
4
fix diversity analysis
#582
d4straub
closed
1 year ago
1
Error executing Ampliseq through pbs/Torque executor
#581
pehenrique
closed
1 year ago
5
Feat/init ci nf test
#580
sateeshperi
closed
1 year ago
8
Error locating home in single-end analysis
#579
pehenrique
closed
1 year ago
5
Nf core template merge 2.8
#578
d4straub
closed
1 year ago
2
Add sintax
#577
jtangrot
closed
1 year ago
6
Important! Template update for nf-core/tools v2.8
#576
nf-core-bot
closed
1 year ago
0
Filter codon
#575
lokeshbio
closed
1 year ago
10
Add UNITE 9.0 databases
#574
prototaxites
closed
1 year ago
5
fix single end empty file handling
#573
d4straub
closed
1 year ago
1
Parser error for single-end data
#572
lch14forever
closed
1 year ago
2
Option to filter low-abundant ASVs before running QIIME2_ANCOM_ASV
#571
SergeWielhouwer
closed
1 year ago
6
nf-test-init-config-pipeline-minimal-tests-snaps
#570
sateeshperi
closed
1 year ago
5
Make header in overall_summary consistent
#569
jtangrot
closed
1 year ago
2
Filter COI ASV sequences based on their length and codons
#568
lokeshbio
closed
1 year ago
8
use phylogenetic placement output in qiime
#567
d4straub
closed
1 year ago
1
added description to --exclude_taxa param
#566
dariader
closed
1 year ago
1
Add more details on exclude taxa 559
#565
dariader
closed
1 year ago
0
Add phylogenetic placement
#564
d4straub
closed
1 year ago
1
add ref tax abbreviation to DADA2 output tables
#563
d4straub
closed
1 year ago
1
Phylogenetic placement part 2
#562
erikrikarddaniel
opened
1 year ago
0
Phylo placement part 1
#561
erikrikarddaniel
opened
1 year ago
0
Add classifier name and database name to output file names
#560
erikrikarddaniel
closed
1 year ago
1
Add more details on --exclude_taxa value taxonomy format
#559
Ste40
closed
1 year ago
2
Pipeline summary report
#558
tillenglert
closed
1 year ago
8
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