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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Ampliseq fails during reannotation of ASVs
#552
pragermh
closed
1 year ago
9
Update version to 2.6.0dev
#551
d4straub
closed
1 year ago
6
Review suggestions
#550
d4straub
closed
1 year ago
2
Release 2.5.0
#549
d4straub
closed
1 year ago
5
change barrnap filtering
#548
d4straub
closed
1 year ago
1
ASV filtering with barrnap could be improved
#547
d4straub
closed
1 year ago
2
Prepare for release 2.4.2
#546
d4straub
closed
1 year ago
1
Fix addsh
#545
jtangrot
closed
1 year ago
2
Fix fasta input
#544
jtangrot
closed
1 year ago
15
bin/add_sh_to_taxonomy.py needs updating to match UNITE db files
#543
jtangrot
closed
1 year ago
5
Strange results with fasta input
#542
jtangrot
closed
1 year ago
9
Remove taxonomic adjustments
#541
d4straub
closed
1 year ago
2
module compilation error
#540
skose82
closed
1 year ago
7
COI accepted for SBDIexport
#539
jtangrot
closed
1 year ago
2
Sample filter
#538
d4straub
closed
1 year ago
2
Fix sbdi export
#537
jtangrot
closed
1 year ago
1
Samples with '-' in name get converted to '.' after dada2 steps
#536
davised
closed
1 year ago
13
Run barrnap with fasta
#535
erikrikarddaniel
closed
1 year ago
2
Add COIDB documentation
#534
d4straub
closed
1 year ago
2
Barrnap doesn't get called with fasta input
#533
erikrikarddaniel
closed
1 year ago
1
Pipeline finishes with no plots/analysis with qiime2
#532
skose82
closed
1 year ago
2
Update metadata documentation
#531
d4straub
closed
1 year ago
2
Fix conda packages
#530
d4straub
closed
1 year ago
2
fix black formatting
#529
d4straub
closed
1 year ago
2
Update QIIME2 from 2022.8 to 2022.11
#528
d4straub
closed
1 year ago
4
Output format cannot be FASTQ since no quality values are available
#527
johnne
closed
1 year ago
5
Run exits with exit status (137) even when --max_memory specified
#526
srikanthkris
closed
1 year ago
6
Filter samples by total counts before downstream analysis
#525
d4straub
closed
1 year ago
1
Error when running the pipeline on a machine with Apple silicon (M1 processor)
#524
gbaiao
closed
1 year ago
6
Parallelization processes in DADA2_DENOISE and RM_CHIMERAS
#523
sgaleraalq
closed
1 year ago
9
Bug with v2.4.1: categorical data required in metadata
#522
chuan-wang
closed
1 year ago
2
export DADA2 QC svg
#521
d4straub
closed
1 year ago
1
add conda package digest
#520
d4straub
closed
1 year ago
2
Pipeline reference to multiqc report
#519
d4straub
closed
1 year ago
1
Add COIDB DADA2 reference taxonomy database
#518
johnne
closed
1 year ago
13
no space left on device error
#517
hkaspersen
closed
1 year ago
2
QIIME2_DIVERSITY: QIIME2_TREE Not working for me
#516
sgaleraalq
closed
1 year ago
33
Cannot specify version of GTDB in ampliseq v2.3.1
#515
AnotherSimon
closed
1 year ago
2
Important! Template update for nf-core/tools v2.7.2
#514
nf-core-bot
closed
1 year ago
0
Merging template updates 2.7.2
#513
d4straub
closed
1 year ago
2
Running pipeline with conda profile fails with "Error in library(digest) : there is no package called 'digest'"
#512
lbiernot
closed
1 year ago
7
Adding the pipeline reference to the MultiQC report
#511
d4straub
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.1
#510
nf-core-bot
closed
1 year ago
1
Bump version to 2.5.0dev
#509
d4straub
closed
1 year ago
2
replace single backslashes with double backslashes
#508
d4straub
closed
1 year ago
1
Apply review suggestions
#507
d4straub
closed
1 year ago
1
Release 2.4.1
#506
d4straub
closed
1 year ago
2
change version to 2.4.1
#505
d4straub
closed
1 year ago
1
Fix warnings introduced in nextflow 22.10
#504
d4straub
closed
1 year ago
2
fix FORMAT_TAXONOMY_QIIME
#503
d4straub
closed
1 year ago
2
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