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nf-core
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demultiplex
Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
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Reads dropped when demultiplexing a sample across lanes.
#182
AaronNHart
closed
2 months ago
2
Individual Multiqc reports per lane / flow cell
#181
jenmuell
closed
7 months ago
1
Escape angle brackets in output.md
#180
k1sauce
closed
5 months ago
1
Important! Template update for nf-core/tools v2.13.1
#179
nf-core-bot
closed
5 months ago
1
Post-release v1.4.1
#178
Aratz
closed
5 months ago
1
Release candidate 1.4.1
#177
Aratz
closed
8 months ago
2
Pre-release v1.4.1
#176
Aratz
closed
8 months ago
7
URGENT: pin nf-validation version
#175
nvnieuwk
closed
8 months ago
4
Important! Template update for nf-core/tools v2.13
#174
nf-core-bot
closed
8 months ago
0
chore: Emiller88 => edmundmiller
#173
edmundmiller
closed
8 months ago
1
nf-core documentation error
#172
rulixxx
closed
3 months ago
0
Issue with AWS and NfcoreTemplate.groovy
#171
rulixxx
closed
5 months ago
1
Fix badges
#170
Aratz
closed
9 months ago
2
Falco result for single End FastQ cannot show in the MultiQC report
#169
wzheng0520
closed
9 months ago
1
Important! Template update for nf-core/tools v2.12
#167
nf-core-bot
closed
9 months ago
1
skip over empty fastqs after demultiplex and continue gracefully
#166
glichtenstein
closed
5 months ago
12
skip over empty fastqs after demultiplex
#165
glichtenstein
closed
9 months ago
4
Some singularity images are missing when using `nf-core download demultiplex`
#164
Aratz
closed
3 months ago
5
Important! Template update for nf-core/tools v2.11.1
#163
nf-core-bot
closed
10 months ago
1
Important! Template update for nf-core/tools v2.11
#162
nf-core-bot
closed
10 months ago
2
Bump version to 1.5.0dev
#161
Aratz
closed
10 months ago
1
Release candidate 1.4.0
#160
Aratz
closed
10 months ago
2
Pre-release v1.4.0
#159
Aratz
closed
10 months ago
2
Update all modules
#158
Aratz
closed
10 months ago
1
Fix `bcl2fastq` and `bclconvert` publishDir
#157
Aratz
closed
10 months ago
4
bcl-convert setting of --bcl-num-parallel-tiles causes very poor performance
#156
jrandall
closed
10 months ago
5
Set publish mode for FastQs
#155
edmundmiller
closed
10 months ago
2
No fastq.gz in NA folder after usage of --skip_tools "falco,fastp"
#154
jenmuell
closed
10 months ago
2
test profile fails with singularity
#153
JohannesKersting
closed
12 months ago
1
FEAT: update bclconvert to 4.2.4
#152
maxulysse
closed
1 year ago
4
FEAT: update bclconvert to 4.2.4
#151
maxulysse
closed
1 year ago
2
[Question]: Upgrading bcl-convert to 4.2.4
#150
tamuanand
closed
11 months ago
5
Add samplesheet generation
#149
edmundmiller
closed
2 months ago
1
Use teams in CODEOWNERS
#148
edmundmiller
closed
1 year ago
1
Add Kraken2 step
#147
Aratz
closed
3 months ago
3
Update the citation tools
#146
edmundmiller
opened
1 year ago
0
Fix MultiQC report generation
#145
Aratz
closed
1 year ago
1
MultiQC report is empty
#144
Aratz
closed
10 months ago
2
Add option to run CheckQC after demultiplexing with bcl2fastq
#143
matrulda
closed
3 months ago
7
Demux dies for empty files
#142
FelixKrueger
closed
5 months ago
4
Important! Template update for nf-core/tools v2.10
#141
nf-core-bot
closed
1 year ago
1
Make it possible to skip MultiQC
#140
Aratz
closed
1 year ago
1
Update samplesheet in usage
#139
edmundmiller
opened
1 year ago
0
Support different input schema's for different demultiplexers
#138
edmundmiller
opened
1 year ago
1
Wrong REGEX to exclude "Undetermined" fastq files
#137
mblohmer
closed
1 year ago
0
Fastq files missing from output / report, 10x single cell
#135
rifius
closed
3 months ago
3
Remove confusing language for sample sheets (related to Issue #98)
#133
AdrijaK
closed
3 months ago
4
Important! Template update for nf-core/tools v2.9
#132
nf-core-bot
closed
1 year ago
1
Bump b2fq tests
#131
edmundmiller
closed
3 months ago
2
Remove_aws_ecr_public_profile
#130
adamrtalbot
closed
1 year ago
1
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