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nrnb
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GoogleSummerOfCode
Main documentation site for NRNB GSoC project ideas and resources
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Improve and expand Cytoscape’s color mapping options
#40
scootermorris
closed
7 years ago
3
Drag and Drop or Palette Editor for SBGN and other graphical notations in Cytoscape
#39
scootermorris
closed
3 years ago
2
Drag and Drop or Palette Editor for SBGN and other graphical notations in Cytoscape
#38
RBVI
closed
8 years ago
0
Import Cytoscape files into GraphSpace
#37
tmmurali
closed
8 years ago
4
Import graphs in multiple formats into GraphSpace
#36
tmmurali
closed
8 years ago
2
Notification system for GraphSpace
#35
tmmurali
closed
7 years ago
12
Implement BioFabric Renderer for Cytoscape
#34
wlongabaugh
closed
8 years ago
1
Interconversion between the systems biology modeling formats SBML and BioPAX
#33
draeger
closed
8 years ago
6
Advanced search on WikiPathways
#32
mkutmon
closed
4 years ago
4
Tutorial mode for PathVisio
#31
mkutmon
closed
6 years ago
4
Over-representation module for WikiPathways
#30
mkutmon
closed
4 years ago
0
Extending and improving PathVisio data import
#29
mkutmon
closed
5 years ago
1
Improved citation framework for PathVisio and WikiPathways
#28
mkutmon
closed
5 years ago
3
BridgeDb plugin for PathVisio
#27
mkutmon
closed
5 years ago
2
Breathe life into KEGG pathways with KEGGtranslator
#26
draeger
closed
3 years ago
0
Random networks for CentiScaPe
#25
giovanniscardoni
closed
8 years ago
0
SIR model for CentiScaPe
#24
giovanniscardoni
closed
5 years ago
1
SBML Reporter: a new systems biology model documentation tool
#23
mhucka
closed
3 years ago
5
Converter from COBRA format to SBML Level 3 "FBC" Version 2
#22
mhucka
closed
6 years ago
1
Converter from CellDesigner diagrams to proper SBML layout+rendering format
#21
mhucka
closed
8 years ago
1
Refactor Existing Converters into the Systems Biology Format Converter (SBFC) and Add Tests
#20
cannin
closed
5 years ago
1
Offline SBML validation in the Java-based JSBML library
#19
niko-rodrigue
closed
8 years ago
1
Java support for Deviser, a code generation system for SBML libraries
#18
niko-rodrigue
closed
8 years ago
1
MasterMap - advanced Network merge
#17
risserlin
closed
7 years ago
4
Bipartite layout for Cytoscape
#16
risserlin
closed
4 years ago
3
Tutorials with demos
#15
maxkfranz
closed
8 years ago
1
Adjacency Matrix Renderer
#14
maxkfranz
closed
5 years ago
4
Integrate CoSE layout into Cytoscape
#13
maxkfranz
closed
7 years ago
1
Clustering algorithms
#12
maxkfranz
closed
8 years ago
3
KLayJS layout extension
#11
maxkfranz
closed
7 years ago
0
Web service for SBGN map validation
#10
ugurdogrusoz
closed
5 years ago
13
Visualizing genomic alterations in cancer pathways in cBioPortal
#9
ugurdogrusoz
closed
8 years ago
2
"Flattening" of hierarchical systems biology models in JSBML
#8
niko-rodrigue
closed
6 years ago
2
Biological Pathway Styling Themes
#7
ariutta
closed
6 years ago
3
Details Panel for Semantic Terms
#6
ariutta
closed
7 years ago
0
Collaborative System for Creating/Sharing Biological Icons
#5
ariutta
closed
6 years ago
5
Developing Web Interface For The Online Resource for Interface- Based Interaction Networks (TOR-IBIN)
#4
MoHelmy
closed
8 years ago
1
Interactive Web Interfaces for Cytoscape Desktop
#3
AlexanderPico
closed
2 years ago
16
Drag and Drop or Palette Editor for SBGN and other graphical notations in Cytoscape
#2
AlexanderPico
closed
8 years ago
1
Upgrading Ontology Tagging at WikiPathways
#1
AlexanderPico
closed
6 years ago
1
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