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napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
https://www.napari-hub.org/plugins/napari-ome-zarr
BSD 3-Clause "New" or "Revised" License
27
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21
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[pre-commit.ci] pre-commit autoupdate
#69
pre-commit-ci[bot]
closed
2 years ago
1
Pre commit ci update config
#68
joshmoore
closed
2 years ago
0
Write ome-zarr images (feature request)
#67
haesleinhuepf
opened
2 years ago
1
Unable to load webknossos hosted zarr datasets
#66
jstriebel
closed
2 months ago
16
[pre-commit.ci] pre-commit autoupdate
#65
pre-commit-ci[bot]
closed
2 years ago
5
Reading from private S3 bucket
#64
jkh1
opened
2 years ago
1
Fail to read multi-image.ome.zarr from local filesystem
#63
jkh1
closed
2 years ago
3
[pre-commit.ci] pre-commit autoupdate
#62
pre-commit-ci[bot]
closed
2 years ago
0
UI controls for browsing Plate Fields
#61
will-moore
opened
2 years ago
0
[pre-commit.ci] pre-commit autoupdate
#60
pre-commit-ci[bot]
closed
2 years ago
0
[pre-commit.ci] pre-commit autoupdate
#59
pre-commit-ci[bot]
closed
2 years ago
1
Allow any filepath that *contains* zarr
#58
will-moore
closed
2 years ago
2
Best way to save/view RGB images
#57
maweigert
closed
2 years ago
1
Demo zarr does not work
#56
maweigert
closed
2 years ago
7
Add minimal napari requirement for the plugin to be discovered
#55
sbesson
closed
2 years ago
20
Treat PlateLabels layer as Labels
#54
will-moore
opened
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#53
pre-commit-ci[bot]
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#52
pre-commit-ci[bot]
closed
2 years ago
1
RFE: relax filename_patterns to read child elements
#51
sbesson
closed
2 years ago
4
open ngff file with lower resolution pyramid
#49
satra
closed
2 years ago
4
[pre-commit.ci] pre-commit autoupdate
#48
pre-commit-ci[bot]
closed
2 years ago
1
OME-XML metadata support
#47
joshmoore
opened
2 years ago
4
[pre-commit.ci] pre-commit autoupdate
#46
pre-commit-ci[bot]
closed
2 years ago
1
opening zarr file just the lowest pyramid level is loaded
#45
mfranzon
closed
2 years ago
12
[pre-commit.ci] pre-commit autoupdate
#44
pre-commit-ci[bot]
closed
2 years ago
1
Copy pre-commit from ome-zarr-py
#43
joshmoore
closed
2 years ago
3
Convert to npe2 (Fix #27 and #41)
#42
joshmoore
closed
2 years ago
19
napari reader preferences are not respected
#41
maweigert
closed
2 years ago
3
Is there a equivalent of `channel_axis` property?
#40
ajitjohnson
closed
2 years ago
2
High-content screening ngff metadata schema empty image
#39
mfranzon
closed
2 years ago
4
Can't open volumetric data via S3 (works locally!)
#38
constantinpape
closed
2 years ago
3
CLI: napari <PATH> fails for some ome.zarr files
#37
constantinpape
closed
2 years ago
2
Layer names
#36
constantinpape
closed
2 years ago
4
Labels should be opened as label layer
#35
constantinpape
closed
2 years ago
4
Right click on any layer fails
#34
constantinpape
opened
2 years ago
4
Are "labels" supported by the plugin?
#33
constantinpape
closed
2 years ago
5
coordinateTransformations scale list
#32
will-moore
closed
2 years ago
3
v0.4 axes transforms
#31
will-moore
closed
2 years ago
14
replace git by https
#30
jburel
closed
2 years ago
0
Napari colormaps within OME-Zarr Metadata
#29
camFoltz
opened
2 years ago
4
CITATION.cff: remove version and date-released and use canonical
#28
sbesson
closed
2 years ago
4
Move to new plugin architecture
#27
joshmoore
closed
2 years ago
1
Add vispy to requirements
#26
DragaDoncila
closed
2 years ago
4
Fix link to s3
#25
pwalczysko
closed
2 years ago
0
Update README with new URLs
#24
jni
closed
2 years ago
2
installation page usage error, ValueError: No plugin found capable of reading 'https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001240.zarr/'.
#23
mezwick
closed
2 years ago
24
Cannot open OME-Zarr created with bioformats2raw
#21
dpshepherd
closed
1 year ago
17
Failed to open a zarr file
#20
bpavie
closed
1 year ago
1
moves plugin citation info to citation.cff file
#19
neuromusic
closed
2 years ago
14
colormap renamed to color
#18
will-moore
closed
2 years ago
4
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