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omerwe
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polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
MIT License
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Create lockfile for conda environment
#154
jdblischak
closed
1 year ago
1
rpy2 causing issues?
#153
humanpaingeneticslab
closed
1 year ago
6
Extracting annotations - including multiple annotation sources in the --annot parameter?
#152
Diluent67
closed
1 year ago
1
Run tests via GitHub actions
#151
jdblischak
closed
1 year ago
1
Only run one susieR finemapping function
#150
jdblischak
closed
1 year ago
1
Pin rpy2<3.5.7
#149
jdblischak
closed
1 year ago
5
Mac OS installing problem
#148
dirkjasmit
closed
1 year ago
1
The rationale behind set_snpid_index
#147
Ojami
closed
1 year ago
12
Functional Annotation Datasets
#146
Diluent67
closed
1 year ago
1
X-chromosome fine-mapping
#145
daxxio
closed
1 year ago
1
Pre-computed LD matrix link
#144
karbalaei
closed
1 year ago
14
preparing input files for cS2G
#143
humanpaingeneticslab
closed
1 year ago
0
Tuning of sample
#142
mommy003
closed
1 year ago
1
Credible set missing and variant duplicates
#141
deniseomahony01
closed
1 year ago
2
BOLT-LMM estimated beta for much smaller number of SNP than polyfun, does that matter?
#140
WeiCSong
closed
1 year ago
1
Issues with GWA fine-mapping
#139
mkoromina
closed
1 year ago
2
Issues with precalculated UKBB LD matrices
#138
liqingbioinfo
closed
1 year ago
2
Connection timed out
#137
wuyangf7
closed
1 year ago
1
run S-LDSC to get the prior causal probabilities using self-defined annotations
#136
wuyangf7
closed
1 year ago
4
Is PolyPred applicable to dichotomized phenotypes (case/control)?
#135
liqingbioinfo
closed
1 year ago
1
direction of beta remain the same despite allele switch
#134
bnj50
closed
1 year ago
7
how to combine gwas and functional betas from one data set
#133
bnj50
closed
1 year ago
3
error in first step
#132
bnj50
closed
1 year ago
1
question on concept
#131
bnj50
closed
1 year ago
2
Poly pred cant find python 8
#130
mommy003
closed
1 year ago
1
question on resources
#129
bnj50
closed
1 year ago
7
Polyfun without prior
#128
liangend
closed
1 year ago
1
MAF for cases and controls
#127
RaviBot
closed
1 year ago
1
about missing annotations for rare variants
#126
szhan1000
closed
1 year ago
3
Best method for extracting 95% CS if agnostic to no of causal variants
#125
Marijn-Schipper
closed
1 year ago
1
Computing in-sample LD
#124
mkoromina
closed
2 years ago
4
Alternative to HESS estimate
#123
jerome-f
closed
1 year ago
1
PolyPred weights are zeros
#122
zichengwang98
closed
1 year ago
8
Changed bgen processing loop
#121
jerome-f
closed
2 years ago
1
`true_divide` errors with `--compute-h2-bins` when re-estimating per-SNP heritabilities
#120
jdblischak
closed
1 year ago
2
AttributeError: module 'susieR' has no attribute 'susie_bhat'
#119
bk11-lab
closed
2 years ago
14
Can PolyFun be applied to eQTL summary statistics from multiple genes
#118
gmgaous
closed
1 year ago
1
Several questions about PolyFun annotations.
#117
liqingbioinfo
closed
2 years ago
4
Assertion Error when using functional susie fine mappping
#116
dietina
closed
7 months ago
13
UKB as LD reference panel to do fine-mapping in loci from EUR ancestry GWAS meta-analysis
#115
AMCalejandro
closed
2 years ago
4
HESS estimates and zero heritability
#114
freg1086
closed
2 years ago
1
Error with aggregate_finemapper_results.py
#113
mkoromina
closed
2 years ago
6
Error: Estimating residual variance failed: the estimated value is negative
#112
jcm6t
closed
2 years ago
2
Key Error 'IID'- PolyPred error
#111
mkoromina
closed
2 years ago
9
Sample size for BOLT-LMM summary statistics
#110
dietina
closed
2 years ago
1
polypred.py: error: unrecognized arguments
#109
mkoromina
closed
2 years ago
8
Issue when computing PRS via polypred
#108
mkoromina
closed
2 years ago
9
Issue when munging the stats
#107
mkoromina
closed
2 years ago
4
Error when running polyfun with custom created annotations
#106
mkoromina
closed
2 years ago
8
Error in step "Estimating functional enrichment using S LDSC"
#105
KPIYUSHA7
closed
2 years ago
2
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