open2c open2c_examples issues

open2c / open2c_examples

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IndexError: positional indexers are out-of-bounds in insulation score computation

#31 yuanyuanhe1999 closed 4 months ago
4
Add examples for showing effect of low coverage and finding TADs

#30 Yaoyx closed 7 months ago
9
nested multiprocessing in notebooks with mpire

#29 sergpolly opened 10 months ago
2
Add new notebook

#28 Phlya opened 12 months ago
4
reuse large downloads AMAP

#27 sergpolly opened 1 year ago
1
update env

#26 Phlya opened 1 year ago
0
Pairtools figures proposal

#25 agalitsyna opened 2 years ago
1
create directory structure

#24 gfudenberg opened 2 years ago
0
small fix needed: ticks in pileups use "flank" variable that has unexpected meaning

#23 agalitsyna opened 2 years ago
0
add simplified dots notebook

#22 sergpolly closed 2 years ago
4
add examples of saddles for: quantifying GC content preferences, Rabl conformation, etc.

#21 gfudenberg opened 2 years ago
0
helper module for open2c_examples notebooks to import

#20 sergpolly opened 2 years ago
0
Mention CLI equivalent for each Open2C example?

#19 agalitsyna opened 2 years ago
0
added-cooltools-version-check

#18 gfudenberg closed 2 years ago
1
cvd-and-ins-updates

#17 gfudenberg closed 2 years ago
1
notebooks update

#16 gfudenberg closed 2 years ago
2
list bullet points to * from -

#15 gfudenberg closed 3 years ago
1
diagsum_asymm desynchronized

#14 gfudenberg closed 2 years ago
0
saddle update and cvd note

#13 gfudenberg closed 3 years ago
1
small viz updates

#12 gfudenberg closed 3 years ago
1
Viewframe update for examples!

#11 gfudenberg closed 3 years ago
1
draft compartments_and_saddles.ipynb

#10 gfudenberg closed 3 years ago
1
use my own one instead of a bioframe to fetch the genomic features from the UCSC

#9 wbszhu closed 3 years ago
4
Dot calls

#8 agalitsyna closed 2 years ago
2
pileup_CTCF(update): Regions table is always a dataframe

#7 agalitsyna closed 3 years ago
1
io

#6 golobor opened 3 years ago
2
Download API enabled. logbin variables renamed. Pileup of CTCF around boundaries.

#5 agalitsyna closed 3 years ago
3
0.0.0

#4 gfudenberg opened 4 years ago
3
update contacts-v-distance notebook with trans-expected

#3 sergpolly closed 4 years ago
1
order arms as chromosomes in scalings

#2 sergpolly closed 4 years ago
2
outline of viz ipynb

#1 gfudenberg closed 4 years ago
0