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Issue tracker for Open Targets Platform and Open Targets Genetics Portal
https://platform.opentargets.org https://genetics.opentargets.org
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PIS transformation extraction: `target` step project score
#3491
d0choa
closed
1 week ago
0
PIS transformation extraction: `target` step Ensembl
#3490
d0choa
closed
1 week ago
0
PIS transformation extraction: `target` step gnomAD (genetic constraint)
#3489
d0choa
closed
2 weeks ago
0
PIS transformation extraction: `target` step sub-cellular locations
#3488
d0choa
closed
1 week ago
0
Add QC flag to all top hit credible sets
#3487
d0choa
closed
2 months ago
0
Updating table components in the Genetics UI
#3486
prashantuniyal02
opened
2 months ago
0
Update Chemical Probes to P&D 02.2024 release
#3485
ireneisdoomed
opened
2 months ago
0
Make a mock of Finngen study index resource url.
#3484
project-defiant
closed
2 months ago
1
PIS transformation extraction: `openfda` step
#3483
javfg
closed
1 week ago
1
PIS transformation extraction: `homologues` step
#3482
javfg
closed
1 month ago
3
Implement the data transformations removed from PIS
#3481
javfg
opened
2 months ago
0
LD clumping doesn't work as intended
#3480
DSuveges
closed
2 months ago
1
Add additional visualisations/features to new product pages
#3479
buniello
closed
2 months ago
1
Add biosample dependencies to PIS
#3478
Tobi1kenobi
closed
2 months ago
10
Integrate PPP specific evidence parsers with the other parsers
#3477
DSuveges
closed
2 months ago
1
Gentropy dataset metadata JSON
#3476
d0choa
opened
2 months ago
0
The DAG for harmonisation and fine-mapping of GWAS Catalog summary statistics
#3475
prashantuniyal02
closed
1 month ago
0
The DAG for fine-mapping of UKBB+FinnGen MA
#3474
prashantuniyal02
opened
2 months ago
0
Fine-mapping of UKBB-PPP
#3473
prashantuniyal02
closed
2 months ago
1
Add and debug pan UKBB LD matrix for afr and csa
#3472
prashantuniyal02
closed
2 months ago
1
Add the new LD source - pan-UKBB for three ancestries
#3471
prashantuniyal02
closed
1 month ago
0
Scope gentropy POS loading strategy (JSON vs Parquet)
#3470
d0choa
closed
5 days ago
3
Flag and then filter MHC region from credible sets
#3469
d0choa
closed
2 months ago
0
Filter credible sets for 99% during release process
#3468
d0choa
closed
2 months ago
1
Clumping GWAS Catalog top hits
#3467
d0choa
closed
2 months ago
3
Convert OTAR EFO OWL to JSON
#3466
d0choa
closed
1 month ago
4
The genetic data release 24.11 (early November)
#3465
addramir
closed
3 days ago
4
Add QC `explained by Susie credible set in the region`
#3464
d0choa
closed
2 months ago
1
Move L2G gold standard to the curation repo
#3463
ireneisdoomed
closed
4 days ago
4
Generate gentropy based EnsemblVep output
#3462
d0choa
opened
2 months ago
0
Odds ratios are not harmonised in the GWAS Catalog curated association ingestion
#3461
DSuveges
closed
2 months ago
3
Migrate Variant Index dag to orchestration genetics_etl
#3460
project-defiant
closed
2 months ago
1
Improve disease/target evidence ingestion from uniprot
#3459
DSuveges
closed
1 month ago
6
L2G feature list discussion
#3458
xyg123
closed
2 months ago
3
Consider downweighting evidence from inherited terms in target prioritisation
#3457
Tobi1kenobi
opened
2 months ago
3
Promote features for new L2G feature matrix
#3456
project-defiant
closed
2 months ago
4
Migrate pan-UKBB LD matrixes from AWS to GCP
#3455
d0choa
closed
2 months ago
5
Add `condition` to eQTL study index
#3454
d0choa
closed
2 months ago
0
Generate gentropy-based L2G evidence
#3453
d0choa
closed
1 month ago
7
Implementing validation step to flag study loci where any of the tags are not in the variant index
#3452
DSuveges
closed
2 months ago
1
Validation of StudyIndex and CredibleSet datasets
#3451
project-defiant
closed
2 months ago
7
ClinVar and UniProt inappropriate term inheritance
#3450
Tobi1kenobi
opened
2 months ago
5
Clarification on AstraZeneca PheWAS Data in Gene Burden Evidence Source
#3449
nickzren
closed
2 months ago
3
Change hashing strategy for StudyLocusId generation in StudyLocus object
#3448
project-defiant
closed
2 months ago
5
Datasource controls modified message also to be displayed on the prioritisation view
#3447
prashantuniyal02
opened
2 months ago
0
Updating Frontend UI local assets
#3446
prashantuniyal02
opened
2 months ago
0
Create biosample index to resolve Tissue/cell type entities
#3445
d0choa
closed
2 months ago
3
Adding `studyType` to `StudyLocus` and `Colocalisation` (StudyLocusOverlaps)
#3444
d0choa
closed
2 months ago
3
remove functionality to query credible sets by disease
#3443
jdhayhurst
opened
2 months ago
0
Add a `category` filter and match all query to the facet search API
#3442
jdhayhurst
opened
2 months ago
2
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