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Issue tracker for Open Targets Platform and Open Targets Genetics Portal
https://platform.opentargets.org https://genetics.opentargets.org
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PheWas Plot scoping phase
#3537
buniello
opened
2 months ago
6
Convert `StudyLocusId` to `String`
#3535
d0choa
closed
1 month ago
1
Create DAG for top-hit GWAS Catalog
#3534
d0choa
closed
4 weeks ago
3
Single cell eQTL ingestion from eQTLgen
#3533
addramir
opened
2 months ago
0
Pan UKBB GWAS data ingestion
#3532
addramir
opened
2 months ago
1
Application and access to the AllOfUs data
#3531
addramir
opened
2 months ago
1
Change the way how CSs are assigned to loci in SuSiE
#3530
addramir
opened
2 months ago
1
validate_lead_pvalue in study locus fillters all StydyLoci but it shouldn't
#3529
addramir
closed
1 month ago
5
Select the list of effector genes for "out-of-sample" validation
#3528
addramir
closed
6 days ago
2
Adding GWAS summary statistics QC as flag to study level QC
#3527
addramir
opened
2 months ago
1
Implement dynamically updating gold standard list
#3526
addramir
opened
2 months ago
6
Refactor the logic of training the model
#3525
addramir
opened
2 months ago
1
Refactor logic for gold standard Negative selection process
#3524
addramir
opened
2 months ago
0
Merge features across studies which have the same EFO
#3523
addramir
opened
2 months ago
0
Implement logic to save the feature matrix when it is generated
#3522
addramir
closed
1 month ago
2
The final list of features for the release
#3521
addramir
closed
4 days ago
5
Million Veteran Program (MVP) Summary Results access
#3520
addramir
opened
2 months ago
0
New LD matrices for Pakistani/Bangladeshi from H&G
#3519
addramir
opened
2 months ago
0
New LD matrices form Biobank of Japan
#3518
addramir
opened
2 months ago
0
New LD matrices from Gnomad v4/v5
#3517
addramir
opened
2 months ago
0
Adding MR/ratio beta to colocalisation
#3516
addramir
closed
13 hours ago
4
Adding multiple ancestry logic to gentropy
#3515
addramir
opened
2 months ago
0
Use major ancestry in PICS fine-mapping
#3514
addramir
closed
1 month ago
1
Ingestion of old credible sets from old OTG
#3513
addramir
opened
2 months ago
0
Add the intervals features
#3512
addramir
opened
2 months ago
0
New OT Genetics Evidence Widget Scoping
#3511
buniello
closed
3 weeks ago
1
Co-loc widgets in credible set page
#3510
buniello
opened
2 months ago
2
Adding protein_coding_gene as a feature
#3509
addramir
opened
2 months ago
0
Add QC flag to PICS top-hits in studies for which we have PICS sumstats credible sets
#3508
d0choa
closed
2 months ago
0
Adding window-based cluming to GWAS Catalog top-hits
#3507
addramir
closed
2 months ago
0
PIS transformation extraction: `expression` step
#3506
javfg
closed
5 days ago
0
IBD GWAS in gentropy pipline requested by one of the partners
#3505
addramir
closed
8 hours ago
1
Visualising QC flags for studies and credible sets
#3504
buniello
closed
6 days ago
1
In silico predictions widget color-coding scoping
#3503
buniello
closed
6 days ago
7
Cred Set Plot scoping ticket
#3502
buniello
opened
2 months ago
3
GWAS study table on platform study page (shared traits studies)
#3501
buniello
opened
2 months ago
0
Scientific validation of the release data
#3500
addramir
opened
2 months ago
2
PIS transformation extraction: `so` step
#3499
javfg
closed
1 month ago
5
PIS transformation extraction: `disease` step `MONDO`
#3498
javfg
opened
2 months ago
0
PIS transformation extraction: `disease` step `HPO`
#3497
javfg
opened
2 months ago
0
PIS transformation extraction: `disease` step `EFO`
#3496
javfg
closed
1 month ago
3
PIS transformation extraction: `disease` step `HPO Phenotypes`
#3495
javfg
closed
1 month ago
1
Carma test nondeterministic fail in the CI pipeline tests
#3494
project-defiant
opened
2 months ago
2
The DAG for harmonisation and fine-mapping of UKBB-PPP
#3493
addramir
closed
1 month ago
5
24.09 only partially released, missing GCS data
#3492
dhimmel
closed
2 months ago
3
PIS transformation extraction: `target` step project score
#3491
d0choa
closed
5 days ago
0
PIS transformation extraction: `target` step Ensembl
#3490
d0choa
closed
5 days ago
0
PIS transformation extraction: `target` step gnomAD (genetic constraint)
#3489
d0choa
closed
1 week ago
0
PIS transformation extraction: `target` step sub-cellular locations
#3488
d0choa
closed
5 days ago
0
Add QC flag to all top hit credible sets
#3487
d0choa
closed
2 months ago
0
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