openvax mhcflurry issues

openvax / mhcflurry

Peptide-MHC I binding affinity prediction

http://openvax.github.io/mhcflurry/

Apache License 2.0

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Change ensemble size from 8 to 12

#98 timodonnell closed 7 years ago
0
Reuse Keras models optimization

#97 timodonnell closed 7 years ago
3
Prediction Speed Caching Improvements

#96 rohanpai closed 7 years ago
3
implement multi-process (single node) parallelization for training and predicting

#95 timodonnell closed 6 years ago
0
Bump keras version, set mhcflurry version to 0.9.1

#94 timodonnell closed 7 years ago
3
Small updates

#93 timodonnell closed 7 years ago
1
Kubeface training for mhcflurry

#92 rohanpai closed 7 years ago
8
add a default hyperparameters.json file to class1_affinity_prediction directory

#91 rohanpai closed 7 years ago
1
Bump travis python 3 version to 3.6

#90 timodonnell closed 7 years ago
1
Add helper functions for potential mhcflurry wrappers

#89 armish closed 7 years ago
2
support more alleles

#88 timodonnell closed 6 years ago
1
support outputting percentile ranks

#87 timodonnell closed 6 years ago
1
MHCflurry 0.9

#86 timodonnell closed 7 years ago
9
Fix bug in score_from_peptides_df

#85 timodonnell closed 7 years ago
1
Add class1 ensemble models, with model selection using imputation

#84 timodonnell closed 7 years ago
1
Add class1 ensemble models, with model selection using imputation

#83 timodonnell closed 7 years ago
7
Antigen presentation

#82 timodonnell closed 7 years ago
8
Kubeface model training

#81 timodonnell closed 7 years ago
1
adding keras layers for dealing with masks in variable length sequence inputs

#80 iskandr closed 7 years ago
5
Added Windows compatibility.

#79 alexanderwhatley closed 7 years ago
8
hide fancyimpute import unless it is actually needed

#78 timodonnell closed 7 years ago
1
Weird error message when installling.

#77 alexanderwhatley closed 7 years ago
5
amino_acid.index_encoding is slow

#76 timodonnell closed 7 years ago
1
"ImportError: No module named numpy" when Installing mhcflurry

#75 tinyheero closed 7 years ago
1
Simplified parallelism & cross-validation

#74 iskandr closed 7 years ago
1
only install futures for PY2

#73 iskandr closed 7 years ago
3
Retrain public models w/ imputation and cut a new release

#72 hammer closed 7 years ago
1
Construct canonical filtered read data set so that I can start tuning increasing accuracy in known cases

#71 hammer closed 7 years ago
2
support latest keras and tensorflow backend

#70 timodonnell closed 7 years ago
2
error running test

#69 bosmont closed 7 years ago
2
Pin keras version

#68 timodonnell closed 7 years ago
4
README mhcflurry-predict command is broken

#67 wwang-nmdp closed 7 years ago
2
check if latest pypi version works

#66 timodonnell closed 7 years ago
0
README tweak

#65 timodonnell closed 7 years ago
0
Learning rate matters

#64 iskandr closed 6 years ago
1
kreas has no attribute 'load_model'

#63 ever4cyth closed 8 years ago
1
run example notebook as part of travis

#62 timodonnell closed 6 years ago
0
switch to mhcnames for normalize_allele_name

#61 timodonnell closed 7 years ago
1
Kim2014 comparison, mhcflurry-predict tool, reimplement parallelization with futures

#60 timodonnell closed 8 years ago
5
switch off joblib and onto concurrent.futures for parallelized model selection code

#59 timodonnell closed 8 years ago
0
support ensembles of class1 allele specific predictors

#58 timodonnell closed 7 years ago
5
make a multi-allele predictor

#57 timodonnell closed 7 years ago
1
explore setting some training data aside for final validation of released models

#56 timodonnell closed 6 years ago
0
add a mhcflurry-score tool

#55 timodonnell closed 6 years ago
2
add a mhcflurry-predict tool

#54 timodonnell closed 8 years ago
0
push automatically to PyPI on new release

#53 timodonnell closed 6 years ago
4
what are the units of your predictions?

#52 flamholz closed 8 years ago
4
Remove scripts for now

#51 timodonnell closed 8 years ago
1
Tweak Dockerfile

#50 timodonnell closed 8 years ago
3
Big refactor to prepare for release

#49 timodonnell closed 8 years ago
9

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