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openvax
/
mhcflurry
Peptide-MHC I binding affinity prediction
http://openvax.github.io/mhcflurry/
Apache License 2.0
191
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Safe load
#142
timodonnell
closed
5 years ago
0
Add Loader to yaml.load call
#141
susannasiebert
closed
5 years ago
4
mhcflurry-class1-select-allele-specific-models gets stuck at 60%
#140
haoyangz
closed
5 years ago
1
use measurement inequalities for quantitative measurements when available from IEDB
#139
timodonnell
closed
5 years ago
1
Possible inconsistencies in the dataset.
#138
grayfall
closed
5 years ago
4
Update pandas.read_table to pandas.read_csv
#137
susannasiebert
closed
5 years ago
4
Customize threads
#136
timodonnell
closed
5 years ago
1
Control spawned threads during predict
#135
ccario83
closed
5 years ago
2
is mhcflurry more accurate than NetMHCpan-4.0
#134
kobejamescurry
closed
5 years ago
4
Kim evaluation
#133
timodonnell
closed
5 years ago
0
IC50 vs percentile rank
#132
saskra
closed
5 years ago
3
installation guide does not work - tensorflow version
#131
tahuh
closed
5 years ago
1
Use all alleles and peptides at once
#130
saskra
closed
5 years ago
2
How to pre-processe the duplicate peptide in datasets?
#129
0x1orz
closed
5 years ago
1
remove special characters like `*` and `:` from model filenames
#128
timodonnell
closed
4 years ago
0
"mhcflurry-downloads fetch" under Windows does not work as expected
#127
saskra
closed
5 years ago
6
How to handle imbalanced data?
#126
0x1orz
closed
5 years ago
1
v1.2.2
#125
timodonnell
closed
6 years ago
1
huge difference of performance between v0.9.2 and v.1.2.1
#124
weipenegHU
closed
6 years ago
8
fail to fetch mass-spec model
#123
weipenegHU
closed
5 years ago
5
Minor updates
#122
timodonnell
closed
6 years ago
1
Does training data contain mass-spec data?
#121
weipenegHU
closed
6 years ago
2
mhcflurry 1.2
#120
timodonnell
closed
6 years ago
1
be more careful about how IEDB entries with serotype only are used
#119
timodonnell
closed
4 years ago
0
mhcflurry 1.1
#118
timodonnell
closed
6 years ago
0
Please bump Keras
#117
jekriske-lilly
closed
6 years ago
3
The error of downloing the trained models
#116
zhouqiuhu
closed
6 years ago
5
MHCflurry 1.0.0: support for percentile ranks, cross validation, faster predictions, and other improvements
#115
timodonnell
closed
6 years ago
50
Implement BLOSUM62 encoding
#114
timodonnell
closed
6 years ago
2
mhcflurry-predict errors if input CSV contains bad allele name
#113
julia326
closed
6 years ago
2
add option in train script to do cross validation
#112
timodonnell
closed
6 years ago
1
add instructions (or link) for running over a protein sequence fasta using mhctools
#111
timodonnell
closed
6 years ago
1
update README with instructions for installation using conda
#110
timodonnell
closed
6 years ago
0
mhcflurry-class1-train-allele-specific-models errors with allele arg
#109
julia326
closed
6 years ago
3
Fixing code typo: allelle -> allele.
#108
julia326
closed
6 years ago
8
update setup.py
#107
timodonnell
closed
6 years ago
3
Getting different results than README
#106
mhalagan
closed
6 years ago
1
mhcflurry-downloads fetches 0.9.1/models_class1 not 0.9.2 - update
#105
mhalagan
closed
6 years ago
2
mhcflurry-downloads fetch failed
#104
weipenegHU
closed
6 years ago
7
Remove versioneer
#103
timodonnell
closed
7 years ago
1
Set up versioneer
#102
laserson
closed
7 years ago
5
publish auto-generated code docs to something like readthedocs.org
#101
timodonnell
closed
6 years ago
1
update README
#100
timodonnell
closed
7 years ago
0
Add speed test script
#99
timodonnell
closed
7 years ago
4
Change ensemble size from 8 to 12
#98
timodonnell
closed
7 years ago
0
Reuse Keras models optimization
#97
timodonnell
closed
7 years ago
3
Prediction Speed Caching Improvements
#96
rohanpai
closed
7 years ago
3
implement multi-process (single node) parallelization for training and predicting
#95
timodonnell
closed
6 years ago
0
Bump keras version, set mhcflurry version to 0.9.1
#94
timodonnell
closed
7 years ago
3
Small updates
#93
timodonnell
closed
7 years ago
1
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