oruebel ndx-icephys-meta issues

oruebel / ndx-icephys-meta

NWB extensions for origanizing intracellular electrophysiology metadata

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Track porting of the extension to NWB Core

#82 oruebel opened 3 years ago
0
error on the README script when used with h5py>=3.1.0

#81 anilbey closed 3 years ago
4
Minor fixes to run readme code using latest HDMF

#80 rly closed 3 years ago
0
WIP: Refactor add_recording to reduce complexity

#79 rly closed 3 years ago
0
WIP: Fix pynwb class inheritance

#78 rly closed 3 years ago
0
Latest tests fail

#77 rly closed 3 years ago
2
AttributeError: type object 'HierarchicalDynamicTableMixin' has no attribute '_get_fields'

#76 luiztauffer closed 3 years ago
2
Storing data from multiple electrodes?

#75 rly closed 3 years ago
1
Feature request: a key to map the nwbfile_in.stimulus to intracellular_recordings[n]["stimuli"]

#74 anilbey closed 3 years ago
4
to_denonormalized_table not working as intended

#73 bendichter closed 3 years ago
1
to_hierarchical_dataframe not working as intended

#72 bendichter closed 3 years ago
1
Unnest nested spec type definitions

#71 rly closed 4 years ago
3
Fix two broken tests

#70 rly closed 4 years ago
0
Tests fail

#69 rly closed 3 years ago
1
Make all tables AlignedDynamicTables

#68 oruebel opened 4 years ago
0
Partial data still added to intracellular_recordings if add_intracellular_recording fails

#67 lvsltz closed 4 years ago
0
Category tables require metadata even if stimulus/object is missing

#66 lvsltz closed 3 years ago
1
Copy passed dicts before adding new items

#65 lvsltz closed 4 years ago
0
Add/timereftype

#64 oruebel closed 3 years ago
6
Prevent binding of stimuli, responses and electrodes metadata dictionaries to external variables

#63 lvsltz closed 4 years ago
1
Add category to the add_column example

#62 lvsltz closed 4 years ago
1
compression of new tables

#61 lvsltz closed 4 years ago
5
Extract complex VectorData to its own type: TimeSeriesRef

#60 rly closed 3 years ago
3
Remove nested type definition specifications

#59 rly closed 4 years ago
1
Test and fix AlignedDynamicTable.to_dataframe

#58 oruebel closed 4 years ago
0
Validation error in example file

#57 rly opened 4 years ago
4
Profile read/write performance of the extension

#56 oruebel opened 4 years ago
0
to_denormalized_dataframe() creates weird MultiIndex column ('i', 'd')

#55 lvsltz closed 4 years ago
2
Support custom VectorIndex columns for conversion to hierar…chical dataframe

#54 oruebel closed 4 years ago
0
to_hierarchical_dataframe() fails on tables that contain indexed columns

#53 lvsltz closed 4 years ago
5
Add stimulus, response, and electrode subtables for IntracellularRecordings

#52 oruebel closed 4 years ago
1
HierarchicalDynamicTableMixin.to_hierarchical_dataframe fails on empty hcol target table

#51 oruebel closed 4 years ago
0
Added module for testing the HierarchicalDynamicTableMixin

#50 oruebel closed 4 years ago
0
Update names of neurodata_types, assigned names, and corresponding code

#49 oruebel closed 4 years ago
0
Add documentation for defining time slices in intracellular_recordings

#48 oruebel closed 4 years ago
0
Add stimulus_type column to sweep_sequence table

#47 oruebel closed 4 years ago
0
Replace use of ic_ prefix with icephys_ prefix

#46 oruebel closed 4 years ago
0
Check and fix use of incompatible stimulus and response types

#45 oruebel closed 4 years ago
0
Add NWBFile.get_ic_meta_parent_table

#44 oruebel closed 4 years ago
0
Enable use of stimulus template

#43 oruebel closed 4 years ago
0
Fix scalar dtypes in tests to avoid warnigns

#42 oruebel closed 4 years ago
0
adding response with no corresponding stimulus

#41 bendichter closed 4 years ago
2
import DT and DTR from pynwb instead of hdmf

#40 bendichter closed 4 years ago
1
Suggestion: Add super simple example to README

#39 rly closed 4 years ago
3
Example notebooks should use either current clamp or voltage clamp

#38 rly closed 4 years ago
1
Add stimulus_type metadata table

#37 oruebel opened 4 years ago
2
Avoid using `ic` as abbreviation for icephys

#36 t-b closed 4 years ago
1
Add documentation for how to enter time slices using the add_intracellular_recording interface

#35 t-b closed 4 years ago
0
API: add_intracellular_recording

#34 t-b closed 4 years ago
2
Add stimulus_type column to sweep_sequence table

#33 oruebel closed 4 years ago
0