oschwengers bakta issues

oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

GNU General Public License v3.0

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issues

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Inquiry on CDS annotation

#296 songmj86 closed 4 months ago
2
Is there a way to deactivate the overlap detection so bakta does not filter my input proteins?

#295 Daniel-Tichy closed 1 month ago
5
pyrodigal, pyhmmer dependencies test using sys.executable

#294 EricDeveaud closed 5 months ago
1
use sys.executable instead of 'python'

#293 EricDeveaud closed 5 months ago
2
Diamond Error -9

#292 cloeme closed 2 months ago
3
Bakta Web Does Not Work

#291 Dabiguina94 closed 4 months ago
6
PSC failed! diamond-error-code=-11

#290 DariaGI closed 4 months ago
2
tRNAscan-SE slow with multiple threads

#289 ohickl opened 5 months ago
3
Make the --region parameter better match the output of PGAP

#288 Dx-wmc closed 1 month ago
10
Name and Product don't match Dbxref

#287 ktmeaton closed 2 months ago
3
Possible issues running bakta in Singularity

#286 andreaswallberg closed 6 months ago
1
KEGG annotations - the number is much lower number than expected

#285 tvtv195 closed 2 months ago
4
Roary is not working with bakta-generated gff3-files

#284 LindavdGvB closed 4 months ago
1
Downgrading dependencies is needed when installing bakta from conda

#283 LeonCharlesTranchevent closed 5 months ago
2
Bakta run times on cluster

#282 loulanomics closed 4 months ago
4
Inquiry about the coding density equation

#281 AhmedElsherbini closed 5 months ago
4
Color coding in bakta_plot --type cog

#280 deminatanja closed 6 months ago
2
Reduce locus_tag offset from 5 to 1

#279 oschwengers closed 1 month ago
0
circos legend

#278 3between7 closed 3 days ago
3
CRISPR position doesn't include last spacer

#276 oschwengers closed 8 months ago
0
'SQL error!', IndexError('tuple index out of range')

#275 prekijpatel closed 5 hours ago
11
Bakta neither generated circular genome plots nor error messages for running circos command

#274 1996xjm closed 7 months ago
5
DeepSig could not be executed! Please make sure DeepSig is installed and executable

#273 daisy238 closed 7 months ago
5
Bakta Diamond error

#272 dannyionescu closed 8 months ago
4
Exception: diamond error! error code: -11

#271 jjpadilla1987 closed 9 months ago
6
Update db build scripts

#270 oschwengers closed 10 months ago
0
Option to Skip the AMR detection step

#268 abelTan131 opened 10 months ago
11
Fix CRISPR detection

#267 oschwengers closed 10 months ago
0
origin of replication detection not match Ori-Finder web server

#266 Jigyasa3 closed 1 month ago
1
Failed bakta run for some genomes

#265 ZarulHanifah closed 9 months ago
8
Document how to download and update DB when using docker

#264 tadast closed 11 months ago
1
%2C instead of common in GFF3 files

#263 kevinmyers closed 11 months ago
4
Bakta fails using --regions if a sequence does not contain a valid start codon

#262 NicolasNaepflin closed 9 months ago
3
MacOS M2 cannot install bakta using conda.

#261 YuLanSky closed 11 months ago
1
add scripts/make-user-region-GFFs.py

#260 marade opened 12 months ago
0
Support a priori user-provided feature regions

#259 oschwengers closed 12 months ago
0
bakta is renaming input contigs in its outputs

#258 splaisan closed 1 year ago
4
Something wrong with bakta_db download

#257 ZarulHanifah closed 11 months ago
3
produce the --replicons input content based on the flye assembly_info.txt

#256 splaisan opened 1 year ago
3
pyrodigal issues with fresh 1.8.2 conda install

#255 splaisan closed 1 year ago
5
Increasing genome annotation: integrating StORF-Reporter functionality into bakta

#254 Dx-wmc closed 11 months ago
3
ERROR: Could not detect/read %s version!', command[0]

#253 xiongqian123456789 closed 11 months ago
2
Re-activate parallel pyrodigal gene prediction

#252 oschwengers closed 1 year ago
0
Introduce auxiliary scripts

#251 oschwengers closed 1 year ago
1
Add import feature for user-provided regions and/or features

#250 oschwengers closed 11 months ago
17
Improve PILER-CR CRISPR parser

#249 oschwengers closed 1 year ago
0
Improve PILER-CR CRISPR parser

#248 oschwengers closed 1 year ago
1
Transfer annotations from similar genome

#247 simone-pignotti opened 1 year ago
5
Merge summary files into one excel sheet.

#246 AhmedElsherbini closed 1 year ago
3
Is it possible to import my own cds fasta file for annotation?

#245 PengfanZhang closed 11 months ago
3

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