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pangenome
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pggb
the pangenome graph builder
https://doi.org/10.1038/s41592-024-02430-3
MIT License
368
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Add possibility to input a PAF file skipping `wfmash`
#167
subwaystation
closed
2 years ago
0
Create the `read the docs` documentation
#166
AndreaGuarracino
closed
2 years ago
0
Support higher divergence between input sequences
#165
ekg
closed
2 years ago
1
High div wfmash
#164
ekg
closed
2 years ago
0
building a panviral genome
#163
aliakeefe
closed
1 year ago
2
How to rename my scaffold name of two genomes
#162
Morriyaty
closed
2 years ago
11
How to deal with dual assembly [question]
#161
baozg
closed
2 years ago
2
How to keep the sequence order intact in the graph?
#160
minalj365
closed
2 days ago
7
Help with parameters for a small insect genome
#159
RenzoTale88
closed
1 year ago
2
Linearising the GFA graph with BioGraph and visualing with Panache
#158
brettChapman
closed
1 year ago
35
Command terminated by signal 6
#157
biozzq
closed
2 years ago
2
high-divergence wfmash
#156
ekg
closed
2 years ago
0
Auto viz always
#155
ekg
closed
2 years ago
0
pggb graph comparison to genetic map
#154
GSgen
opened
2 years ago
1
Parameters selection suggestions for highly divergenet plant genome
#153
baozg
closed
2 years ago
1
Core dump when using smoothxg from conda::pggb-0.2.0-hdfd78af_0
#152
songtaogui
closed
2 years ago
5
Using pggb
#151
champ1994
closed
2 years ago
1
fatal error: ../include/wfmash_git_version.hpp: No such file or directory
#150
grenaud
closed
2 years ago
11
Downsampling strategy for the `wfmash` alignment graph
#149
subwaystation
closed
2 years ago
1
A strategy for automatic selection of parameters
#148
subwaystation
closed
2 years ago
1
how to construct pangenome graph from two assembly genome of two species
#147
Aannaw
opened
2 years ago
6
Suggestion for 1D graph visualisation
#146
brettChapman
closed
1 year ago
4
Downstream suggestions for use pggb gfa in the vg pipeline
#145
baozg
closed
2 years ago
19
Command terminated by signal 4
#144
trickovicmatija
closed
2 years ago
16
add bioconda banner and instructions in the README
#143
AndreaGuarracino
closed
2 years ago
0
Simplify user interface
#142
AndreaGuarracino
closed
2 years ago
3
odgi::gfa_to_handle Command terminated by signal 11
#141
egluckthaler
closed
2 years ago
5
Example command issue?
#140
ekimb
closed
3 years ago
2
Issue with odgi
#139
viannam
closed
2 years ago
7
V0.2 pre release
#138
ekg
closed
2 years ago
0
docker build error with MacBook Pro
#137
zmz1988
closed
3 years ago
12
Remove `-w` option from pggb's command lines in the README
#136
AndreaGuarracino
closed
3 years ago
0
help message + yml: we use gfaffix for the normalization
#135
subwaystation
closed
3 years ago
0
Cycles in graph
#134
egoltsman
closed
3 years ago
1
Command terminated by signal 6
#133
emilio-r
closed
2 days ago
2
Seeded abPOA
#132
ekg
closed
3 years ago
0
use smoothxg with a lower default abPOA bandwidth
#131
ekg
closed
3 years ago
0
GFAffix fix in the Docker file
#130
AndreaGuarracino
closed
3 years ago
0
problem in running pggb with empty file
#129
anna176577
closed
2 years ago
4
gfaffix not found with latest PGGB build
#128
brettChapman
closed
3 years ago
8
Issue with the vcf file created using pggb graphs
#127
GSgen
closed
1 year ago
2
expose smoothxg -O --poa-padding
#126
ekg
closed
3 years ago
0
MultiQC v1.11 has an ODGI module!
#125
subwaystation
closed
3 years ago
0
Global 1st local 2nd
#124
ekg
closed
2 years ago
0
don't confuse vg with quotes
#123
ekg
closed
3 years ago
1
update LPA test and Dockerfile
#122
subwaystation
closed
3 years ago
1
Up ups
#121
ekg
closed
3 years ago
0
Poa threads
#120
ekg
closed
3 years ago
0
Behaviour of PGGB when resuming
#119
brettChapman
closed
2 years ago
4
Easy chop
#118
ekg
closed
3 years ago
1
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