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perslab
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CELLEX
CELLEX (CELL-type EXpression-specificity)
GNU General Public License v3.0
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np.float needs to be changed float due to deprecation in Numpy
#38
JordanWean
closed
3 months ago
3
[BUG]: eso.compute error.
#37
myylee
closed
4 months ago
3
[FEATURE REQUEST]: Work with large datasets
#36
brianlamx
closed
3 months ago
1
Update requirements.txt
#35
pvtodorov
closed
1 year ago
0
[BUG]: Operands could not be broadcast together with shapes (15831,12) (15831,15830,13)
#34
LIZW2019
closed
1 year ago
3
[BUG]:Error running eso.compute
#33
andrewjkwok
closed
1 year ago
2
Load input data as sparse matrix
#32
DaianeH
closed
2 years ago
2
[BUG]: Error saving summary data
#31
dah77
closed
2 years ago
3
Metadata_class use
#30
andreanuzzo
closed
3 years ago
6
[BUG]: MissingOutputException in line 200 of /home/wbone/CELLECT/cellect-ldsc.snakefile:
#28
wpbone06
closed
3 years ago
0
eso.results[“esmu”] data.frame lacks index column name
#27
JonThom
closed
4 years ago
1
gene mapping function: from symbol to ensembl
#26
pascaltimshel
closed
4 years ago
3
IndexError: tuple index out of range
#25
rrydbirk
closed
4 years ago
1
parse_input does not detect invalid metadata value types
#24
rrydbirk
opened
4 years ago
5
Warn if negative gene expression values
#23
pascaltimshel
opened
4 years ago
0
Additional methods for gene filtering
#22
pascaltimshel
opened
4 years ago
0
Make tutorial for how to import data from H5ad/loom(/Seurat)
#21
pascaltimshel
opened
4 years ago
0
Improve mapping documentation
#20
tstannius
closed
4 years ago
3
Update parameter name in CELLEX wiki
#19
JonThom
closed
4 years ago
1
Syntax Error in det.py file
#18
vidalarroyo
closed
4 years ago
12
.txt.gz files for "mapping"-functions are not found
#17
bengnielsen
closed
4 years ago
1
Reading in data with pandas in a server setting is slow. How can I speed this up?
#16
DaianeH
closed
4 years ago
4
Memory usage needs to be optimized
#14
liubovpashkova
opened
4 years ago
2
New demo tutorial
#13
liubovpashkova
closed
4 years ago
1
Can not generate n_es_gene plot
#12
liubovpashkova
opened
4 years ago
0
New functionality: implement geneset enrichment test
#11
pascaltimshel
opened
4 years ago
0
Error in READ.ME
#10
liubovpashkova
closed
4 years ago
1
mapping crashes due to FileNotFoundError
#9
tstannius
closed
4 years ago
1
CELLEX crashes if duplicated cell_ids
#8
pascaltimshel
closed
4 years ago
2
quick start tutorial: AttributeError: 'ESObject' object has no attribute 'save'
#7
JonThom
closed
4 years ago
3
Updates, fixes
#6
pvtodorov
closed
4 years ago
2
quick start tutorial: bug when importing cellex module
#5
JonThom
closed
4 years ago
2
List requirements.txt in README
#4
JonThom
closed
4 years ago
2
add R scripts for plotting ES object
#3
pascaltimshel
opened
5 years ago
0
Are hdf5 files produced by CELLEX compatible with R?
#2
tstannius
closed
1 year ago
1
gene_profile plot x-axis labels are offset and sometimes missing
#1
tstannius
closed
1 year ago
2