perslab CELLEX issues - Githubissues

perslab / CELLEX

CELLEX (CELL-type EXpression-specificity)

GNU General Public License v3.0

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issues

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Why all genes showing NaN for the esmu score in one of the cell types on my end?

#39 nh-codem opened 4 days ago
0
np.float needs to be changed float due to deprecation in Numpy

#38 JordanWean closed 5 months ago
3
[BUG]: eso.compute error.

#37 myylee closed 6 months ago
3
[FEATURE REQUEST]: Work with large datasets

#36 brianlamx closed 5 months ago
1
Update requirements.txt

#35 pvtodorov closed 1 year ago
0
[BUG]: Operands could not be broadcast together with shapes (15831,12) (15831,15830,13)

#34 LIZW2019 closed 1 year ago
3
[BUG]:Error running eso.compute

#33 andrewjkwok closed 1 year ago
2
Load input data as sparse matrix

#32 DaianeH closed 2 years ago
2
[BUG]: Error saving summary data

#31 dah77 closed 2 years ago
3
Metadata_class use

#30 andreanuzzo closed 3 years ago
6
[BUG]: MissingOutputException in line 200 of /home/wbone/CELLECT/cellect-ldsc.snakefile:

#28 wpbone06 closed 3 years ago
0
eso.results[“esmu”] data.frame lacks index column name

#27 JonThom closed 4 years ago
1
gene mapping function: from symbol to ensembl

#26 pascaltimshel closed 4 years ago
3
IndexError: tuple index out of range

#25 rrydbirk closed 4 years ago
1
parse_input does not detect invalid metadata value types

#24 rrydbirk opened 4 years ago
5
Warn if negative gene expression values

#23 pascaltimshel opened 4 years ago
0
Additional methods for gene filtering

#22 pascaltimshel opened 4 years ago
0
Make tutorial for how to import data from H5ad/loom(/Seurat)

#21 pascaltimshel opened 4 years ago
0
Improve mapping documentation

#20 tstannius closed 4 years ago
3
Update parameter name in CELLEX wiki

#19 JonThom closed 4 years ago
1
Syntax Error in det.py file

#18 vidalarroyo closed 4 years ago
12
.txt.gz files for "mapping"-functions are not found

#17 bengnielsen closed 4 years ago
1
Reading in data with pandas in a server setting is slow. How can I speed this up?

#16 DaianeH closed 4 years ago
4
Memory usage needs to be optimized

#14 liubovpashkova opened 4 years ago
2
New demo tutorial

#13 liubovpashkova closed 4 years ago
1
Can not generate n_es_gene plot

#12 liubovpashkova opened 4 years ago
0
New functionality: implement geneset enrichment test

#11 pascaltimshel opened 4 years ago
0
Error in READ.ME

#10 liubovpashkova closed 5 years ago
1
mapping crashes due to FileNotFoundError

#9 tstannius closed 5 years ago
1
CELLEX crashes if duplicated cell_ids

#8 pascaltimshel closed 4 years ago
2
quick start tutorial: AttributeError: 'ESObject' object has no attribute 'save'

#7 JonThom closed 5 years ago
3
Updates, fixes

#6 pvtodorov closed 5 years ago
2
quick start tutorial: bug when importing cellex module

#5 JonThom closed 5 years ago
2
List requirements.txt in README

#4 JonThom closed 5 years ago
2
add R scripts for plotting ES object

#3 pascaltimshel opened 5 years ago
0
Are hdf5 files produced by CELLEX compatible with R?

#2 tstannius closed 1 year ago
1
gene_profile plot x-axis labels are offset and sometimes missing

#1 tstannius closed 1 year ago
2