pfmc-assessments PacFIN.Utilities issues

pfmc-assessments / PacFIN.Utilities

R code to manipulate data from the PacFIN database for assessments

http://pfmc-assessments.github.io/PacFIN.Utilities

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Change package name from PacFIN.Utilities

#134 kellijohnson-NOAA opened 3 weeks ago
0
Removing `doSexRatio()` now but do we care about "both" in output, i.e., males and females

#133 kellijohnson-NOAA closed 3 weeks ago
4
Update all labels

#132 kellijohnson-NOAA opened 3 weeks ago
0
Write a vignette

#131 kellijohnson-NOAA opened 3 weeks ago
0
Data request for species yellowtail rockfish

#130 okenk closed 1 month ago
2
Data request for species rougheye/blackspotted rockfish

#129 gertsevv closed 3 weeks ago
5
Add additional message or check for unspecified age methods in cleanPacFIN()

#128 chantelwetzel-noaa opened 4 months ago
1
Unwanted ageing methods not being filter out by cleanPacFIN()

#127 chantelwetzel-noaa opened 4 months ago
0
Data request for species quillback rockfish 2025

#126 brianlangseth-NOAA closed 4 months ago
2
Style code and document

#125 github-actions[bot] closed 4 months ago
0
replace call-document with doc and style workflow

#124 k-doering-NOAA closed 4 months ago
0
Look into `ADJUSTED_GEAR_CODE`

#123 kellijohnson-NOAA opened 9 months ago
0
Adds ageing method 10 to Break and Burn category

#122 kellijohnson-NOAA closed 1 year ago
0
Recognize age method 10

#121 okenk closed 1 year ago
0
Fix `getDB()`

#120 kellijohnson-NOAA closed 1 year ago
0
PullBDS.PacFIN() might use fancy quotes that RODBC::sqlQuery() cannot handle

#119 John-R-Wallace-NOAA closed 1 year ago
6
Data request for petrale and canary (catch only) after fix to 2022 data

#118 iantaylor-NOAA closed 8 months ago
9
Update Roxygen documentation

#117 github-actions[bot] closed 1 year ago
0
Provide better documentation for `getComps()`

#116 kellijohnson-NOAA closed 1 year ago
2
Deprecate default for `tableSample(strat)`

#115 kellijohnson-NOAA opened 1 year ago
0
NA values messing up calculation of Sum_Sampled_Lbs?

#114 iantaylor-NOAA closed 1 year ago
1
`getComps()` uses `Final_Sample_Size_L` not `Final_Sample_Size`?

#113 iantaylor-NOAA closed 1 year ago
6
Clarify Oregon PacFIN BDS samples with SAMPLE_TYPE == "S"

#112 iantaylor-NOAA opened 1 year ago
7
Move `age_representativeness_plot()` to {nwfscSurvey}

#111 kellijohnson-NOAA opened 1 year ago
4
Add functionality to remove fish with ages from length data when using marginal ages

#110 chantelwetzel-noaa opened 1 year ago
3
Fix `getAge()` to **NOT** average

#109 kellijohnson-NOAA closed 1 year ago
8
restore the combineCalCOM() function

#108 iantaylor-NOAA closed 1 year ago
11
Get double read of otoliths into PacFIN

#107 kellijohnson-NOAA opened 1 year ago
1
Update Roxygen documentation

#106 github-actions[bot] closed 1 year ago
0
Data request for species Rex Sole

#105 emilysellinger closed 1 year ago
3
Issue with aggregate function in getExpansion_2 via application to canary age comp expansion

#104 brianlangseth-NOAA opened 1 year ago
5
pivot_wider making a list of ages

#103 chantelwetzel-noaa opened 1 year ago
6
Black Rockfish Oregon and Washington

#102 shcaba closed 1 year ago
4
restore combineCalCOM()?

#101 iantaylor-NOAA closed 1 year ago
23
Update Roxygen documentation

#100 github-actions[bot] closed 1 year ago
0
`new` is making `check()` think that the object is a function

#99 kellijohnson-NOAA opened 1 year ago
0
PACFIN_SPECIES_CODE sometimes has spaces

#98 kellijohnson-NOAA closed 1 year ago
7
Nominal species codes exist in the BDS data but were not checked for

#97 kellijohnson-NOAA closed 1 year ago
3
Remove {knitr} from main code

#96 kellijohnson-NOAA opened 1 year ago
3
get access to cleaned ageing method (aggregating across AGE_METHOD columns)?

#95 iantaylor-NOAA closed 1 year ago
5
Use {styler} to style all code in {PacFIN.Utilities}?

#94 iantaylor-NOAA closed 1 year ago
4
fix writeComps() bug with CAAL columns

#93 iantaylor-NOAA closed 1 year ago
2
Data request for longspine thornyhead

#92 haleyoleynik closed 1 year ago
2
Problem with dependencies for ubuntu (low priority)

#91 iantaylor-NOAA closed 1 year ago
1
feat: add control of "month" in writeComps()

#90 iantaylor-NOAA closed 1 year ago
1
Sample and tows calculated for sexed fish combined

#89 chantelwetzel-noaa closed 1 year ago
3
Data request for shortspine thornyhead

#88 JaneSullivan-NOAA closed 1 year ago
6
Data request for species Petrale Sole (Eopsetta jordani)

#87 iantaylor-NOAA closed 1 year ago
15
Data request for Rex Sole

#86 emilysellinger closed 1 year ago
2
Washington State Black rockfish (Sebastes melanops)

#85 shcaba closed 1 year ago
3