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pfmc-assessments
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PacFIN.Utilities
R code to manipulate data from the PacFIN database for assessments
http://pfmc-assessments.github.io/PacFIN.Utilities
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Look into `ADJUSTED_GEAR_CODE`
#123
kellijohnson-NOAA
opened
4 months ago
0
Adds ageing method 10 to Break and Burn category
#122
kellijohnson-NOAA
closed
8 months ago
0
Recognize age method 10
#121
okenk
closed
8 months ago
0
Fix `getDB()`
#120
kellijohnson-NOAA
closed
1 year ago
0
PullBDS.PacFIN() might use fancy quotes that RODBC::sqlQuery() cannot handle
#119
John-R-Wallace-NOAA
closed
1 year ago
6
Data request for petrale and canary (catch only) after fix to 2022 data
#118
iantaylor-NOAA
closed
3 months ago
9
Update Roxygen documentation
#117
github-actions[bot]
closed
1 year ago
0
Provide better documentation for `getComps()`
#116
kellijohnson-NOAA
closed
1 year ago
2
Deprecate default for `tableSample(strat)`
#115
kellijohnson-NOAA
opened
1 year ago
0
NA values messing up calculation of Sum_Sampled_Lbs?
#114
iantaylor-NOAA
closed
1 year ago
1
`getComps()` uses `Final_Sample_Size_L` not `Final_Sample_Size`?
#113
iantaylor-NOAA
closed
1 year ago
6
Clarify Oregon PacFIN BDS samples with SAMPLE_TYPE == "S"
#112
iantaylor-NOAA
opened
1 year ago
7
Move `age_representativeness_plot()` to {nwfscSurvey}
#111
kellijohnson-NOAA
opened
1 year ago
4
Add functionality to remove fish with ages from length data when using marginal ages
#110
chantelwetzel-noaa
opened
1 year ago
3
Fix `getAge()` to **NOT** average
#109
kellijohnson-NOAA
closed
1 year ago
8
restore the combineCalCOM() function
#108
iantaylor-NOAA
closed
1 year ago
11
Get double read of otoliths into PacFIN
#107
kellijohnson-NOAA
opened
1 year ago
0
Update Roxygen documentation
#106
github-actions[bot]
closed
1 year ago
0
Data request for species Rex Sole
#105
emilysellinger
closed
1 year ago
3
Issue with aggregate function in getExpansion_2 via application to canary age comp expansion
#104
brianlangseth-NOAA
opened
1 year ago
5
pivot_wider making a list of ages
#103
chantelwetzel-noaa
opened
1 year ago
6
Black Rockfish Oregon and Washington
#102
shcaba
closed
1 year ago
4
restore combineCalCOM()?
#101
iantaylor-NOAA
closed
1 year ago
23
Update Roxygen documentation
#100
github-actions[bot]
closed
1 year ago
0
`new` is making `check()` think that the object is a function
#99
kellijohnson-NOAA
opened
1 year ago
0
PACFIN_SPECIES_CODE sometimes has spaces
#98
kellijohnson-NOAA
closed
1 year ago
7
Nominal species codes exist in the BDS data but were not checked for
#97
kellijohnson-NOAA
closed
1 year ago
3
Remove {knitr} from main code
#96
kellijohnson-NOAA
opened
1 year ago
3
get access to cleaned ageing method (aggregating across AGE_METHOD columns)?
#95
iantaylor-NOAA
closed
1 year ago
5
Use {styler} to style all code in {PacFIN.Utilities}?
#94
iantaylor-NOAA
closed
1 year ago
4
fix writeComps() bug with CAAL columns
#93
iantaylor-NOAA
closed
1 year ago
2
Data request for longspine thornyhead
#92
haleyoleynik
closed
1 year ago
2
Problem with dependencies for ubuntu (low priority)
#91
iantaylor-NOAA
closed
1 year ago
1
feat: add control of "month" in writeComps()
#90
iantaylor-NOAA
closed
1 year ago
1
Sample and tows calculated for sexed fish combined
#89
chantelwetzel-noaa
closed
1 year ago
3
Data request for shortspine thornyhead
#88
JaneSullivan-NOAA
closed
1 year ago
6
Data request for species Petrale Sole (Eopsetta jordani)
#87
iantaylor-NOAA
closed
1 year ago
15
Data request for Rex Sole
#86
emilysellinger
closed
1 year ago
2
Washington State Black rockfish (Sebastes melanops)
#85
shcaba
closed
1 year ago
3
Write comps
#84
chantelwetzel-noaa
closed
1 year ago
6
Warning when length scale may be incorrect
#83
brianlangseth-NOAA
closed
1 year ago
1
Clarify summary output from cleanPacFIN
#82
brianlangseth-NOAA
opened
1 year ago
0
cleanPacFIN encountering error
#81
brianlangseth-NOAA
closed
1 year ago
3
Fix-sql by not calling broken table
#80
kellijohnson-NOAA
closed
1 year ago
2
Use `nwfscSurvey::codify_sex` instead of `getSex()`
#79
kellijohnson-NOAA
closed
1 year ago
0
Automation of recreational data
#78
brianlangseth-NOAA
closed
1 year ago
1
Is r cmd check needed?
#77
k-doering-NOAA
closed
1 year ago
1
allow for cleaning ages if no length, length if no ages, etc.
#74
kellijohnson-NOAA
opened
2 years ago
0
Expand `doSexRatio()` to report what fraction of the samples were unsexed and modified
#73
kellijohnson-NOAA
closed
1 month ago
2
Create a project board for PacFIN.Utilities
#72
kellijohnson-NOAA
closed
1 month ago
0
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