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phenoscape
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rphenoscape
R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
https://rphenoscape.phenoscape.org/
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Adds mutual exclusion function
#238
johnbradley
closed
2 years ago
7
Add support for determining mutual exclusivity among phenotypes
#237
johnbradley
closed
2 years ago
6
Fix terminfo tests for API classification optimization
#236
johnbradley
closed
2 years ago
0
Support v2-beta2 kb.phenoscape API
#235
johnbradley
closed
2 years ago
40
Enable v2-beta2 API
#234
johnbradley
closed
2 years ago
1
Removes duplicate test
#233
johnbradley
closed
3 years ago
0
Resolve duplicated test
#232
johnbradley
closed
3 years ago
1
Improves get_study_data example
#231
johnbradley
closed
3 years ago
0
Fix example using deprecated function
#230
johnbradley
closed
3 years ago
1
Fix get_char_matrix multiple state labeled output
#229
johnbradley
closed
2 years ago
1
Combines NeXML char matrix functions
#228
johnbradley
closed
3 years ago
2
Removes KB API limit work around
#227
johnbradley
closed
3 years ago
1
Removes term_freqs taxon_annotations corpus
#226
johnbradley
closed
3 years ago
1
Fixes v2-beta entity subsumer test
#225
johnbradley
closed
3 years ago
0
Update API link in documentation
#224
wdahdul
closed
3 years ago
6
Fix error when building vignette
#223
johnbradley
closed
3 years ago
1
Fix misspelled expect_gte function
#222
johnbradley
closed
3 years ago
1
Fix tests for data changes in v2-beta
#221
johnbradley
closed
3 years ago
0
Fix failing v2-beta API obtaining corpus size test
#220
johnbradley
closed
3 years ago
1
Fixes v2-beta API terminfo test
#219
johnbradley
closed
3 years ago
0
Regenerates docs for small edits
#218
johnbradley
closed
3 years ago
0
Regenerate documentation after small edits
#217
johnbradley
closed
3 years ago
1
Removes IRI interpretation from term_category()
#216
johnbradley
closed
3 years ago
3
Rewrite `term_category()`
#215
hlapp
closed
3 years ago
2
Fix failing v2-beta subsumer frequencies test
#214
johnbradley
closed
3 years ago
5
Fix failing v2-beta term frequencies test
#213
johnbradley
closed
3 years ago
5
Fix failing v2-beta entity subsumer test
#212
johnbradley
closed
3 years ago
7
Fix failing v2-beta term details test
#211
johnbradley
closed
3 years ago
3
Fix failing v2-beta terminfo test
#210
johnbradley
closed
3 years ago
5
Use the kb.phenoscape v2 API
#209
johnbradley
closed
3 years ago
2
Some tests on Release are failing due to timeouts fetching data from API
#208
hlapp
closed
2 years ago
10
Removes dontrun from faster examples
#207
johnbradley
closed
3 years ago
0
Fix github status badge
#206
johnbradley
closed
3 years ago
0
Fix github badge status
#205
johnbradley
closed
3 years ago
0
Consider removing dontrun from examples
#204
johnbradley
closed
3 years ago
2
small edits to descriptive text
#203
wdahdul
closed
3 years ago
0
Edits to text in OntoTrace description
#202
wdahdul
closed
3 years ago
0
Update rphenoscape.Rmd
#201
wdahdul
closed
3 years ago
1
Corpus size for taxa and genes not matching KB UI?
#200
wdahdul
opened
3 years ago
4
Update phen_obj.R
#199
wdahdul
closed
3 years ago
0
as.phenotype print display
#198
wdahdul
closed
2 years ago
4
Adds Owl class for use with get_ontotrace_data()
#197
johnbradley
closed
3 years ago
4
Removes pk_ prefix from pk_get_IRI.R
#196
johnbradley
closed
3 years ago
0
Adds terminfo class
#195
johnbradley
closed
3 years ago
2
Adds terminfo class
#194
johnbradley
closed
3 years ago
0
Regenerates docs with roxygen2 7.1.1
#193
johnbradley
closed
3 years ago
0
Add terminfo class
#192
johnbradley
closed
3 years ago
22
Upgrade to roxygen2 7.1.1
#191
johnbradley
closed
3 years ago
1
Print function for phenotype objects fails if there are no states
#190
johnbradley
closed
2 years ago
6
Preparation for 0.2.16 release
#189
hlapp
closed
3 years ago
3
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