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phenoscape
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rphenoscape
R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
https://rphenoscape.phenoscape.org/
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Changes to address R CMD check and CI issues
#288
hlapp
closed
1 week ago
3
Update LICENSE to comply with DCF format
#287
hlapp
closed
1 week ago
1
Update potentially invalid URLs
#286
hlapp
closed
1 week ago
1
R docs need regenerating for some functions
#285
hlapp
closed
1 week ago
0
Removes testing on R v3, and adds testing R devel
#284
hlapp
closed
4 months ago
3
Some dependencies have become unavailable for R 3.x
#283
hlapp
closed
4 months ago
0
Fix similarity frequency 500 errors
#282
johnbradley
closed
8 months ago
1
Adds includeRelatedSynonyms to taxon_info()
#281
johnbradley
closed
9 months ago
0
Search RelatedSynonym with taxon_info()
#280
wdahdul
closed
9 months ago
4
Fixes CircleCI R3 tests
#279
johnbradley
closed
1 year ago
0
Fix failing R3 tests
#278
johnbradley
closed
1 year ago
12
Skip user agent test on CRAN
#277
johnbradley
closed
1 year ago
0
Fix automated tests
#276
johnbradley
closed
1 year ago
2
error accessing KB API through rphenoscape
#275
meghalithic
closed
1 year ago
5
Adds test for metadata-obtaining functions
#274
johnbradley
closed
1 year ago
0
Improves phenotype print display
#273
johnbradley
closed
1 year ago
0
Fixes printing phenotypes without states
#272
johnbradley
closed
1 year ago
0
Add CSV example file for mutually_exclusive() opposites
#271
johnbradley
opened
1 year ago
2
Adds quality_opposites parameter to mutually_exclusive()
#270
johnbradley
closed
1 year ago
3
Fixes CircleCI tests cache problem
#269
johnbradley
closed
2 years ago
0
Fix failing R4 tests
#268
johnbradley
closed
2 years ago
2
Fixes links to KB API in vignette
#267
hlapp
closed
2 years ago
0
Need to update KB API link in Intro vignette
#266
wdahdul
closed
2 years ago
0
Build date discrepancy with KB UI
#265
wdahdul
opened
2 years ago
1
add PATO shorthand for term_classification()
#264
wdahdul
opened
2 years ago
1
get_char_matrix() error
#263
wdahdul
closed
2 years ago
3
dplyr warning message
#262
wdahdul
closed
2 years ago
3
Upgrade main (master) branch to v0.3.0 pre-release
#261
hlapp
closed
2 years ago
5
Adds polymorphic state-capable function for symbol->label
#260
hlapp
closed
2 years ago
2
Corrects ontotrace behavior if all names fail IRI resolution
#259
hlapp
closed
2 years ago
0
OntoTrace tests issue a warning when taxon not found
#258
hlapp
closed
2 years ago
0
Updates KB API URL to v2
#257
johnbradley
closed
2 years ago
0
Setup CircleCI Scheduled Testing
#256
johnbradley
closed
2 years ago
2
Replaces GitHub action testing with CircleCI
#255
johnbradley
closed
2 years ago
1
Replaces taxa corpus with annotated-taxa/taxon-variation
#254
johnbradley
closed
2 years ago
2
Support annotated-taxa and taxon-variation corpus
#253
johnbradley
closed
2 years ago
3
CI testing has become non-functional
#252
hlapp
closed
2 years ago
1
Improves algorithm and documentation for term category
#251
hlapp
closed
2 years ago
2
Possibly change "Towards" to "Related entities" in the phenotype print display
#250
hlapp
closed
1 year ago
1
Corrects typos and improves examples for extraction from nexml
#249
hlapp
closed
2 years ago
0
Support new KB API corpus changesCorpus KB API changes
#248
johnbradley
closed
2 years ago
9
Increment version for baseline-v0.3.0 branch
#247
hlapp
closed
2 years ago
0
Exclude PATO and ZP from anatomy_ontology_iris()
#246
johnbradley
closed
2 years ago
1
Fix Resnik similarity test with KB dev-beta2 API
#245
johnbradley
closed
2 years ago
4
Upgrade to latest version of KB v2-beta API
#244
johnbradley
closed
2 years ago
1
Add support for new dev v2-beta KB API
#243
johnbradley
closed
2 years ago
4
Update baseline-v0.3.0 URL
#242
johnbradley
closed
2 years ago
0
Update API url for baseline-v0.3.0
#241
johnbradley
closed
2 years ago
0
Allow supplying opposite qualities for use in mutual exclusion
#240
johnbradley
closed
1 year ago
5
Prevent removing only common subsumers in resnik similarity
#239
johnbradley
opened
3 years ago
2
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