pinskylab genomics issues

pinskylab / genomics

Wrangling of genomic data and identity analysis

3 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

link for lab protocols within genomics repo is broken

#38 jahoey closed 4 years ago
3
misssing gen_ids for 50 fish tagged at < 6.0 cm

#37 katcatalano closed 4 years ago
2
Number of fish_indiv changed

#36 mstuart1 closed 5 years ago
2
06_identity-protocol.Rmd is not assigning the same gen_id to genotype matches

#35 mstuart1 closed 5 years ago
0
None of the fish in the fish_obs table appear to be connected through genetic recapture.

#34 mstuart1 closed 5 years ago
1
create a gene pop without a "pop" line for package testing

#33 mstuart1 closed 4 years ago
1
test

#32 mstuart1 closed 5 years ago
0
Why is APCL17_494 missing from the fish_obs table

#31 mstuart1 closed 5 years ago
0
Test issue from slack

#30 mstuart1 closed 5 years ago
0
fish_indiv clarificaton

#29 katcatalano closed 5 years ago
1
Check known issues

#28 mstuart1 opened 5 years ago
0
Check regenotypes

#27 mstuart1 opened 5 years ago
0
Check tagged recaptures

#26 mstuart1 closed 5 years ago
1
Add a notes column to the fish-obs.Rdata table

#25 mstuart1 closed 5 years ago
1
Create a metadata file for the new fish-obs.Rdata table

#24 mstuart1 closed 4 years ago
0
Syntax issue on paragraph 35

#23 kant opened 5 years ago
0
Identity Analysis parameters for Cervus

#22 mstuart1 closed 5 years ago
37
protocols lack continuity

#21 mstuart1 closed 5 years ago
1
how to remove recaptured fish from genepop

#19 mstuart1 closed 5 years ago
6
some recaptured fish lack recap_ids

#18 mstuart1 closed 5 years ago
1
refactor remove_regenos.Rmd to sum across columns

#17 mstuart1 closed 5 years ago
0
Genepop won't write to be readable by Cervus

#16 mstuart1 closed 5 years ago
3
genepop contains ligation ids with .F on the end and also regenotyped individuals with combination names because of genotypes

#15 mstuart1 closed 5 years ago
1
ligation/gen_ids in seq 17 data but not seq 33 data

#14 katcatalano closed 5 years ago
0
fish with same tag_id but different gen_id

#13 katcatalano closed 5 years ago
4
LD protocol

#12 katcatalano closed 5 years ago
1
APOC and APFR in seq03-33 genepop

#11 katcatalano closed 5 years ago
4
fish in seq03-33 without gen_id

#10 katcatalano closed 5 years ago
6
Access transition sizes from other scripts

#9 agdedrick closed 5 years ago
2
recap_id is NA for some fish that are output as recaptured by the recaptured-fish script

#7 mstuart1 closed 5 years ago
1
Define loci to be used for identity and parentage analysis

#20 mstuart1 closed 5 years ago
16
fish in 2012-2015 sequencing data without gen_ids

#6 katcatalano closed 5 years ago
5
genepop file with column names as dDocent contig ID

#5 katcatalano closed 5 years ago
1
ligation IDs appended with .F

#4 katcatalano closed 5 years ago
1
gen_helpers.R - bad function

#3 mstuart1 closed 5 years ago
1
Review code in Genetics/code and make sure all changes are good

#2 mstuart1 closed 5 years ago
1
Review code in Genetics/old and make sure all changes are good

#1 mstuart1 closed 5 years ago
2