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qbic-pipelines
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root-tissue-analysis
Pipeline for pH analysis of A. thaliana root tissue
MIT License
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Upgrade roadmap to newest versions of nf-core template
#32
luiskuhn
opened
2 months ago
0
Provide/test Singularity support
#31
luiskuhn
opened
5 months ago
0
Create Biocontainers for this pipeline
#30
luiskuhn
opened
5 months ago
0
Fix/qpb review
#29
luiskuhn
closed
5 months ago
1
Fixed versioning
#28
Waseju
closed
1 year ago
1
bump versions 1.0.0
#27
ggabernet
closed
1 year ago
1
add uncertainty columns in the "ratios" table of report
#26
luiskuhn
opened
1 year ago
1
Remaining tasks for initial release
#25
luiskuhn
opened
1 year ago
0
Correct class color coding in report
#24
luiskuhn
closed
1 year ago
1
Update to nf-core template
#23
luiskuhn
opened
2 years ago
1
dataset pull
#22
luiskuhn
opened
2 years ago
1
For initial release
#21
Waseju
closed
1 year ago
5
In report, color code the segmentation masks (per class id)
#20
luiskuhn
closed
2 years ago
1
Add references to datasets in README
#19
luiskuhn
closed
1 year ago
1
In report, change column name in Ratios table
#18
luiskuhn
closed
2 years ago
1
Add "full" dataset in zenodo and create a config profile
#17
luiskuhn
closed
2 years ago
1
Change "brightfield" for correct channel name in codebase
#16
luiskuhn
closed
1 year ago
1
Clean up profile configs
#15
luiskuhn
closed
2 years ago
1
cite fiji macro paper in README
#14
luiskuhn
closed
1 year ago
1
Update requirements.txt
#13
Waseju
closed
2 years ago
2
Changed ratios.csv to ratios.tsv and added imgs in report.
#12
Waseju
closed
2 years ago
1
add image dataset description
#11
luiskuhn
closed
1 year ago
1
add uncertanty of prediction
#10
luiskuhn
closed
1 year ago
3
output report should show the processed images for visual inspection
#9
luiskuhn
closed
2 years ago
1
change output ratios file from csv to tsv
#8
luiskuhn
closed
2 years ago
1
Change to dev/master branch
#7
luiskuhn
closed
2 years ago
1
Describe image input in readme
#6
luiskuhn
closed
1 year ago
1
Hotfix for reporting
#5
Waseju
closed
2 years ago
2
Added reporting functionality.
#4
Waseju
closed
2 years ago
2
describe parameters (help string)
#3
luiskuhn
closed
2 years ago
1
Support for OME-TIFF format
#2
luiskuhn
closed
2 years ago
2
Initial pipeline prototype
#1
luiskuhn
closed
2 years ago
3