issues
search
qiime2
/
provenance-lib
QIIME 2 Provenance Replay Tools
BSD 3-Clause "New" or "Revised" License
3
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add brief tutorial to readme
#110
gregcaporaso
closed
1 year ago
0
update README in preparation for QIIME 2 2023.5
#109
gregcaporaso
closed
1 year ago
1
update README and forum tutorial in preparation for inclusion of provenance-lib in the QIIME 2 2023.5
#108
gregcaporaso
closed
1 year ago
0
trivial parserv6 class
#107
colinvwood
closed
1 year ago
0
prep package for addition to the core distribution
#106
gregcaporaso
closed
1 year ago
1
Adds Jupyter Notebook replay driver
#105
ChrisKeefe
closed
9 months ago
3
Adds Jupyter Notebook driver
#104
ChrisKeefe
closed
1 year ago
0
q2_citation.bib for found in /conda/envs/qiime2-2022.2/lib/python3.8/site-packages/provenance_lib/
#103
cherman2
closed
2 years ago
5
API/DOC: Consistency and brevity in command names, improves documentation
#102
ChrisKeefe
closed
2 years ago
0
REFAC: write_citations should handle dags or filepaths
#101
ChrisKeefe
opened
2 years ago
0
BUG: reproducibility-supplement renders temp filepaths in scripts
#100
ChrisKeefe
opened
2 years ago
3
Don't dump captured metadata multiple times
#99
ChrisKeefe
opened
2 years ago
0
Touchless replay
#98
ChrisKeefe
opened
2 years ago
0
Metadata .tsvs lost in replay with multiple metadata inputs
#97
ChrisKeefe
opened
2 years ago
1
ENH: cleans up metadata handling
#96
ChrisKeefe
closed
2 years ago
0
Allow command aliasing
#95
ChrisKeefe
opened
2 years ago
0
Replay Does not Accept Symlink Files
#94
cherman2
opened
2 years ago
0
Fixes setup.py reference to package text assets
#93
ChrisKeefe
closed
2 years ago
0
FileNotFoundError: [Errno 2]. No 'copyright_note.txt'
#92
cherman2
closed
2 years ago
0
Scripts should include target version information
#91
ChrisKeefe
opened
2 years ago
1
Package for Conda
#90
ChrisKeefe
opened
2 years ago
0
CI: drops -e flag from prov_lib pip install
#89
ChrisKeefe
closed
2 years ago
0
Local error message for missing plugins
#88
ChrisKeefe
closed
2 years ago
0
Acknowledge original analyst's IP
#87
ChrisKeefe
closed
2 years ago
0
Support data integrity bug identification
#86
ChrisKeefe
opened
2 years ago
1
Adds copyright thingy to header
#85
ChrisKeefe
closed
2 years ago
0
TEST: aligns test with non-determinism of topological sort
#84
thermokarst
closed
2 years ago
2
DOC: TODO notes -> FIX ME ?
#83
ChrisKeefe
closed
2 years ago
1
ENH: early stopping in replay scripts
#82
nbokulich
opened
2 years ago
1
Add instructions for replay to replay scripts
#81
ChrisKeefe
opened
2 years ago
0
Annotate transitions into/out of QIIME 2 analysis
#80
ChrisKeefe
opened
2 years ago
0
Additional user interfaces
#79
ChrisKeefe
opened
2 years ago
0
Automate computing environment management
#78
ChrisKeefe
opened
2 years ago
0
Compute environment reporting
#77
ChrisKeefe
opened
2 years ago
0
Broad analysis metadata reporting
#76
ChrisKeefe
opened
2 years ago
0
Replay produces a methods manifest
#75
ChrisKeefe
opened
2 years ago
2
Inner view of nested provenance
#74
ChrisKeefe
opened
2 years ago
0
Adds reproducibility supplement command
#73
ChrisKeefe
closed
2 years ago
0
Revert "Reproducibility supplement"
#72
ChrisKeefe
closed
2 years ago
0
Reproducibility supplement
#71
ChrisKeefe
closed
2 years ago
0
OSX may break replay
#70
ChrisKeefe
opened
2 years ago
1
ReplayPythonUsage should optionally capture all results from each action
#69
ChrisKeefe
opened
2 years ago
0
Simple checksum validation tool for CLI?
#68
ChrisKeefe
opened
2 years ago
0
Insert abstract Metaclass for ReplayUsage drivers
#67
ChrisKeefe
opened
2 years ago
0
ReplayCLIUsage: Support lumping outputs into output_dir
#66
ChrisKeefe
opened
2 years ago
0
Additional target interfaces
#65
ChrisKeefe
opened
2 years ago
0
Addresses replay review comments
#64
ChrisKeefe
closed
2 years ago
0
Improve replay from captured metadata files
#63
ChrisKeefe
closed
2 years ago
1
OPT: Memoize dag.collapsed_view
#62
ChrisKeefe
opened
2 years ago
0
Consider supporting a minimal ProvNode definition
#61
ChrisKeefe
opened
2 years ago
0
Next