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rietho
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IPO
A Tool for automated Optimization of XCMS Parameters
http://bioconductor.org/packages/IPO/
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Can parameters obtained from IPO's grouping optimization be used in both the alignment and grouping steps using PeakGroupsParam during alignment?
#75
YUANMENG-1
opened
1 month ago
2
Error in resultIncreased(history) : No isotopes have been detected, peak picking not optimizable by IPO!
#74
v-v1150n
opened
5 months ago
0
error during oprimisation
#73
samuelbertrand44
opened
1 year ago
3
Too much time for optimization!!
#72
arpita-007
opened
2 years ago
6
checks are failing due to mzData
#71
rietho
closed
2 years ago
5
Fix/mz data removal
#70
sneumann
closed
2 years ago
6
Build error due to removed mzData report
#69
sneumann
closed
2 years ago
0
User manual for IPO
#68
HuanLab
closed
2 years ago
0
sampleGroup error... I think.
#67
Phylloxera
opened
3 years ago
0
Issues running IPO on cluster with 15 files
#66
adelabriere
opened
4 years ago
2
definition of grouping optimization score leads to poor results in some cases
#65
tew42
closed
4 years ago
1
IPO parallelizing not working, large scale dataset hundreds to thousands of samples
#64
victorfrnak
opened
4 years ago
3
Workers / Slaves numbers for IPO on clusters
#63
ThomasPouplin
opened
4 years ago
0
std::bad_alloc error
#62
danagibbon
opened
5 years ago
2
xcmsSetStatistic() may produce model with suboptimal results
#61
rickhelmus
opened
5 years ago
2
Error in object@backend$getAllScanHeaderInfo()
#60
ghost
opened
6 years ago
1
Determining the number of xcms runs and DoEs for an optimization run
#59
etrh
opened
6 years ago
1
stop worker failed, Error in serialize, error writing to connection
#58
etrh
opened
6 years ago
1
optimizeXcmsSet expects parameters that are not even used by and related to centWave
#57
etrh
closed
6 years ago
2
IPO optimized parameter showed peak data insertion problem
#56
Titan100
opened
6 years ago
2
ways to improve IPO performance
#55
blueskypie
opened
6 years ago
5
Chromatographic peak detection failed for all files
#54
ghost
closed
6 years ago
3
Error when plotting
#53
sneumann
closed
6 years ago
5
How to optimize the centWave parameter prefilter two values
#52
ljsjwly
closed
6 years ago
2
Option to disable plotting
#51
rietho
closed
6 years ago
0
Error with calcPPS function
#50
lauzikaite
closed
6 years ago
11
Parallelisation issue (?)
#49
lauzikaite
closed
7 years ago
11
Issue running optimizeXcmsSet() with CAMERA isotope peak detection on multiple files.
#48
crmclean
closed
7 years ago
2
Last IPO version (1.7.5) before Bioconductor release
#47
sneumann
closed
6 years ago
1
Step/increment issue
#46
Brainpiercing
closed
6 years ago
3
DoE plotting error
#45
Mexxxx
closed
7 years ago
3
nSlaves deprecated, update to BiocParallel
#44
jorainer
closed
7 years ago
16
Error in .local(object, ...) : Dimensions of profile matrices do not match !
#43
mheiser-md
closed
7 years ago
6
MacOSX: Different results for xcmsSet.centWave.mzdiff
#42
lecorguille
closed
7 years ago
5
Update install guide
#41
mhische-md
closed
8 years ago
1
Unloading snow namespace
#40
mheiser-md
closed
7 years ago
2
Optimization time issue
#39
Titan100
closed
6 years ago
21
Design: return vales of optimizeXcmsSet() and optimizeRetGroup()
#38
sneumann
opened
8 years ago
1
IPO error message for UseMethod("sendData")
#37
leichtle
closed
8 years ago
3
optimizeRetGroup ignoring retcorMethod="loess"
#36
sneumann
closed
8 years ago
5
Uses FORK instead of PSOCK R clusters on Linux/Mac
#35
pcm32
closed
8 years ago
7
Installing IPO error
#34
jjkellogg
closed
8 years ago
2
Error "checkForRemoteErrors(val) : 2 nodes produced errors" when using IPO
#33
jamesrco
closed
7 years ago
7
Unexpected problems with the netCDF and mzXML files
#32
Jiaqc
closed
8 years ago
1
Problems installing IPO in R-3.2.2 version
#31
Jiaqc
closed
7 years ago
0
Unable install any packages in R-3.2.2 version
#30
anupb08
closed
8 years ago
20
MakeCluster(nSlaves, type = "PSOCK")
#29
tobigithub
closed
9 years ago
1
MakeCluster(nSlaves, type = "PSOCK")
#28
tobigithub
closed
8 years ago
5
Unpredictive behaviour with library(Rmpi) installed
#27
tobigithub
closed
9 years ago
2
Lipidomics set creates warnings about profile mode
#26
tobigithub
closed
9 years ago
1
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