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rkimoakbioinformatics
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oakvar
Genomic variant analysis platform
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[BUG] Modules root directory does not exist.
#58
vivekruhelaIIITD
closed
1 month ago
3
[BUG] Issue with annotators (cadd, hgvs)
#57
MariosGvr
closed
5 months ago
11
bug_fix_read_sql
#56
acmoudleysa
closed
1 year ago
1
[BUG] `get_wgs_reader` method sometimes returns lowercase bases.
#55
sinmojito
closed
1 year ago
3
read_crv first row deletion fix
#54
sinmojito
closed
1 year ago
1
fixed read_crv issue where polars was reading from previously opened …
#53
sinmojito
closed
1 year ago
1
Adding tutorial images corresponding to v2.9.36 and updating tutorial accordingly.
#52
sinmojito
closed
1 year ago
1
fixed the wsl2 issue where gui redirects to localhost instead of 0.0.0.0
#51
sinmojito
closed
1 year ago
1
[BUG] Accessing GUI via 0.0.0.0 on WSL2
#50
sinmojito
closed
1 year ago
6
galaxy wrapper
#49
beatrizmclm
closed
1 year ago
0
[Feature] Small changes of GUI for uploading file and annotation button
#48
marfantyk
closed
1 year ago
3
[Feature] one button for applying filters
#47
marfantyk
closed
1 year ago
3
[BUG] dependent to a reporter modules get replaced by other modules if you choose more than one reporter
#46
marfantyk
closed
1 year ago
2
[BUG] problems with gene filters
#45
antonkulaga
closed
1 year ago
2
Snakemake wrapper for ov run
#44
beatrizmclm
closed
1 year ago
1
Oakvar CWL workflow
#43
gehadkamel
closed
1 year ago
6
add first wdl workflow
#42
gehadkamel
closed
1 year ago
8
several users with empty login names are possible [BUG]
#41
antonkulaga
closed
1 year ago
3
please change the icon for manually entering variants [Feature]
#40
antonkulaga
closed
1 year ago
1
show dependencies of dependencies in selected modules[Feature]
#39
antonkulaga
opened
1 year ago
4
submission does not clean up [BUG]
#38
antonkulaga
closed
1 year ago
1
[BUG] Error on "ov run exampleinput -a clinvar -t vcf"
#37
lopatich
opened
1 year ago
2
[Feature] there should be separate Log for reporters as well as some way to display progress
#36
antonkulaga
closed
1 year ago
2
[BUG] Errors on "ov system setup" command
#35
marfantyk
closed
1 year ago
13
[BUG] polyphen2:2022.09.19 does not update
#34
antonkulaga
closed
1 year ago
3
[BUG] no dependency control for reporters
#33
antonkulaga
closed
1 year ago
6
make updating less confusing
#32
antonkulaga
closed
1 year ago
4
g.vcf support
#31
antonkulaga
opened
2 years ago
7
Error during setup in excelreporter
#30
Alex-Karmazin
closed
2 years ago
1
OakVar do not uninstalling completely
#29
Alex-Karmazin
closed
2 years ago
4
Duplicating rows when us annotators
#28
Alex-Karmazin
closed
2 years ago
12
Pagenation not loading data
#27
Alex-Karmazin
closed
2 years ago
3
[Feature] hot reload
#26
antonkulaga
opened
2 years ago
3
No drop-down list in the filter tab
#25
OlgaBorysova
closed
2 years ago
4
feature request [can be done in collaboration with us]: support for PRS modules
#24
antonkulaga
opened
2 years ago
1
feature request: function to group by genotype
#23
antonkulaga
opened
2 years ago
1
feature request: presets for annotators and reporters
#22
antonkulaga
closed
1 year ago
2
feature request: use of pagination instead of 100K variants limit
#21
antonkulaga
closed
2 years ago
2
feature request: the tab with available reports should be displayed in annotators results
#20
antonkulaga
closed
1 year ago
9
feature request: adding new annotator to already annotated vcf
#19
antonkulaga
opened
2 years ago
3
feature request: autodetect option for reference genome
#18
antonkulaga
closed
1 year ago
2
Problem updating dbsnp
#17
Alex-Karmazin
closed
2 years ago
4
Problem occurred while setting up the system
#16
lnalinaf
closed
2 years ago
22
JSON Error in stacktrace
#15
Alex-Karmazin
closed
1 year ago
6
improvement of UI loading speed (minor issue)
#14
antonkulaga
closed
1 year ago
12
minor ui bug with system update
#13
antonkulaga
closed
2 years ago
4
Error during processing vcf file.
#12
Alex-Karmazin
closed
2 years ago
29
'list' object has no attribute 'rstrip' in multiple modules
#11
antonkulaga
closed
2 years ago
12
oakvar.exceptions.BadFormatError: error: All samples have the reference genotype.
#10
antonkulaga
closed
2 years ago
12
minor bug with non-standard home folders
#9
antonkulaga
closed
1 year ago
4
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