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ropensci
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RNeXML
Implementing semantically rich NeXML I/O in R
https://docs.ropensci.org/RNeXML
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Fixes a couple small typos
#209
hlapp
closed
5 years ago
1
Adds constructors for all classes in the hierarchy
#208
hlapp
closed
5 years ago
2
rootEdge disposable?
#207
hlapp
closed
5 years ago
3
Silences warnings about undeclared/unknown classes in method defs
#206
hlapp
closed
5 years ago
1
Fixes duplicate S4 class name issues without changing class names
#205
hlapp
closed
5 years ago
5
Ensure NULL list elements in nexml slots are not converted to XML
#204
hlapp
closed
5 years ago
2
Refactors the S4 class structure for meta elements
#203
hlapp
closed
5 years ago
3
Fixes several bugs in handling metadata
#202
hlapp
closed
5 years ago
2
Makes most S4 classes in the package pseudo-namespaced
#201
hlapp
closed
5 years ago
4
Enables parsing and serialization of XML-type literal metas
#200
hlapp
closed
5 years ago
1
Adds simplify option for table returned by get_metadata()
#199
hlapp
closed
5 years ago
8
Includes nested meta elements in get_metadata() result
#198
hlapp
closed
5 years ago
1
Fix blank node behavior of nested meta elements
#197
cboettig
closed
5 years ago
2
Failure to handle nested meta elements
#196
hlapp
closed
5 years ago
5
Adds description of changes for next release
#195
hlapp
closed
5 years ago
0
Regenerates man pages with markdown support turned on
#194
hlapp
closed
5 years ago
0
Patch LiteralMeta use of literal node text
#193
cboettig
closed
5 years ago
0
Fix serialization of polymorphic and uncertain states
#192
cboettig
closed
5 years ago
0
Polymorphic (and probably uncertain) states fail to get written out in write.nexml()
#191
hlapp
closed
5 years ago
3
Certain metadata is getting lost upon reading NeXML
#190
hlapp
closed
5 years ago
3
patch circle ci
#189
cboettig
closed
5 years ago
1
Fixes type coercion for morphological characters with polymorphic states
#188
hlapp
closed
5 years ago
1
Provide API to query for member states of polymorphic and uncertain states
#187
hlapp
opened
5 years ago
0
Coercing column type in get_characters() is broken for polymorphic and uncertain states
#186
hlapp
closed
5 years ago
0
Plans for update release to CRAN?
#185
hlapp
closed
5 years ago
10
Drops unneeded suggested dependency on phylobase
#184
hlapp
closed
5 years ago
1
Various test failures with devtools::test()
#183
hlapp
closed
5 years ago
1
Housekeeping for build and check artifacts to be ignored
#182
hlapp
closed
5 years ago
0
Makes test suite more robust, including to missing packages
#181
hlapp
closed
5 years ago
1
.Rd files under version control
#180
hlapp
closed
5 years ago
2
Dependencies for package check recursively bring in this package
#179
hlapp
closed
5 years ago
2
test_publish.R is skipped silently in its entirety
#178
hlapp
opened
5 years ago
3
taxize_nexml tests are inconsistently in part run and in part skipped on CRAN
#177
hlapp
closed
5 years ago
5
taxize_nexml() fails to call use_entrez()
#176
hlapp
closed
5 years ago
1
Provide API to query for polymorphic and uncertain states
#175
hlapp
closed
5 years ago
0
Fixes broken handling of polymorphic and uncertain states
#174
hlapp
closed
5 years ago
1
Patch polymorphic / uncertain state type
#173
cboettig
closed
5 years ago
5
Handling of polymorphic and uncertain character states is badly broken
#172
hlapp
closed
5 years ago
10
get_characters() fails with an error in dplyr::bind_rows()
#171
hlapp
closed
5 years ago
1
Many fewer versions of R are tested than compatibility is claimed for
#170
hlapp
closed
5 years ago
3
clash with "tree" class name provided by cli package
#169
fmichonneau
closed
5 years ago
6
are these test files still needed?
#168
maelle
closed
6 years ago
4
taxize as opt in
#167
cboettig
closed
6 years ago
0
suggest taxize
#166
lawremi
closed
6 years ago
2
phyloXML: Separate R package or not?
#165
gvegayon
closed
5 years ago
8
Ontotrace Example is not valid NeXML?
#164
cboettig
closed
6 years ago
13
patch for compatibility with upcoming version of testthat
#163
cboettig
closed
6 years ago
0
Change fig.path in README.Rmd so output is in tools
#162
amoeba
closed
6 years ago
4
xml matrix with polymorphic states
#161
laurajackson
closed
5 years ago
7
Address CRAN request re README.md images
#160
cboettig
closed
6 years ago
0
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