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ropensci
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taxa
taxonomic classes for R
https://docs.ropensci.org/taxa
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Added `internodes` and `is_internode` functions
#112
zachary-foster
closed
6 years ago
2
Add `branches` function
#111
zachary-foster
closed
6 years ago
2
Update `subset` option documentation
#110
zachary-foster
closed
6 years ago
0
Name default results of `roots`
#109
zachary-foster
closed
6 years ago
0
Anything to incorporate from `binomen::strain()` here?
#108
sckott
opened
6 years ago
0
Starts to add null data patterns to methods
#107
sckott
closed
6 years ago
2
Automate updating data objects for examples (and tests?)
#106
sckott
opened
6 years ago
0
Tabular data for `taxonomy` class
#105
sckott
closed
6 years ago
5
Failing cran checks
#104
sckott
closed
6 years ago
31
Fix use of eval_tidy() for rlang 0.1.3
#103
lionel-
closed
6 years ago
1
supertaxa "subset" option does not work with variables
#102
zachary-foster
closed
6 years ago
3
implement mapping to/support for darwin core terms
#101
sckott
opened
6 years ago
8
lookup_tax_data: When looking up taxonomy of binomials, only look up genus
#100
zachary-foster
opened
6 years ago
10
How to handle identical function names in other packages
#99
zachary-foster
opened
6 years ago
3
Look into replacing class flow chart with DiagrammeR flow chart
#98
zachary-foster
closed
6 years ago
2
"data" argument of `obs_apply` cannot be passed a varaible
#97
zachary-foster
closed
6 years ago
0
Make sure `filter_taxa` maintains order of taxa
#96
zachary-foster
closed
6 years ago
0
What to do with cases with no data/results
#95
sckott
closed
6 years ago
3
Add a way to set taxon names/ranks for a taxonomy/taxmap object
#94
zachary-foster
closed
6 years ago
1
data parsers: Put long, often unused columns last
#93
zachary-foster
closed
6 years ago
0
When parsing classifications that have per-taxon info add input id column
#92
zachary-foster
closed
6 years ago
0
Make default dataset for `n_obs` and `n_obs_1`
#91
zachary-foster
closed
6 years ago
0
Think about the best way to handle failed downloads
#90
zachary-foster
closed
6 years ago
1
duplicated results are not input order
#89
zachary-foster
closed
6 years ago
0
repeated inputs do not return repeated outputs in many funcs
#88
zachary-foster
closed
6 years ago
0
How to deal with multiple taxon ids for one sequence id
#87
zachary-foster
opened
6 years ago
1
`lookup_tax_data` errors when using unnamed vectors
#86
zachary-foster
closed
6 years ago
0
`lookup_tax_data` has a bug that prevents using sequence accession numbers
#85
zachary-foster
closed
6 years ago
0
Consider adding something like `taxonomic_sample` from metacoder
#84
zachary-foster
opened
6 years ago
0
Add arbitrary data vars to `taxa`
#83
zachary-foster
opened
6 years ago
6
span w/ ids/nms/ranks: handle >1 input for statements with operators
#82
sckott
closed
6 years ago
0
Missing fxn
#81
sckott
closed
6 years ago
0
Problem in filter_taxa egs
#80
sckott
closed
6 years ago
0
Make sure that intro vignette is up to date
#79
zachary-foster
closed
6 years ago
0
Warn users initializing `taxmap` with data that has same name as a function
#78
zachary-foster
closed
6 years ago
0
update `taxonomy` docs
#77
zachary-foster
closed
7 years ago
0
change `taxa_` to `taxa`, and remove alias from pkg level man file
#76
sckott
closed
7 years ago
0
with ids/nms/ranks
#75
sckott
closed
6 years ago
0
make sure all examples are in S3 format
#74
zachary-foster
closed
6 years ago
0
add .list and complain if both are used on contructtors
#73
zachary-foster
closed
6 years ago
0
Look into other ids besides numerics ones
#72
zachary-foster
closed
7 years ago
1
rename unobserved to "drop_taxa"
#71
zachary-foster
closed
6 years ago
0
unexport functions the user does not need
#70
zachary-foster
closed
6 years ago
0
database_list: improve man file
#69
sckott
closed
6 years ago
0
make good error if user does not have taxize installed
#68
zachary-foster
closed
7 years ago
0
need to put taxize in Suggests
#67
sckott
closed
7 years ago
0
incorporated some binomen functionality
#66
sckott
closed
7 years ago
0
finish incorporating binomen fxns
#65
sckott
closed
6 years ago
2
binomen fxns: validate user entries
#64
sckott
closed
7 years ago
0
binomen fxns: fail well when not using lazy helpers
#63
sckott
closed
7 years ago
0
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