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ropensci
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taxa
taxonomic classes for R
https://docs.ropensci.org/taxa
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Only print progress bars during interactive use
#162
zachary-foster
closed
6 years ago
0
Parsing vignette
#161
zachary-foster
opened
6 years ago
2
Add demonstration of scalability and speed.
#160
zachary-foster
opened
6 years ago
0
Add example somewhere for how to reassign data to a rank
#159
zachary-foster
opened
6 years ago
0
Consider moving development version to its own branch
#158
zachary-foster
closed
6 years ago
2
When adding new table with `mutate_obs` create `taxon_id` column if inputs named by taxon IDs
#157
zachary-foster
opened
6 years ago
0
Expand documentation for "simplify" option
#156
zachary-foster
opened
6 years ago
0
CRAN release 2.1
#155
zachary-foster
closed
6 years ago
9
Consider allowing the data set to be specified when using NSE
#154
zachary-foster
opened
6 years ago
5
Add warning when a duplicated name is accessed with NSE
#153
zachary-foster
closed
6 years ago
0
Consider moving vignette figures to “vignettes/figures” subdirectory for clarity
#152
zachary-foster
opened
6 years ago
0
Add pkgdown website and reduce readme
#151
zachary-foster
closed
6 years ago
1
Add proper MIT License in LICENSE file
#150
zachary-foster
closed
6 years ago
10
Consider moving CONDUCT.md to .github directory
#149
zachary-foster
closed
6 years ago
4
zero length vectors mess up print method a bit
#148
zachary-foster
closed
6 years ago
2
taxmap/taxonomy print method change idea
#147
zachary-foster
opened
6 years ago
3
Deemphasize non-data parts of print methods like tibbles do
#146
zachary-foster
opened
6 years ago
1
Add database taxon ID checking via regex/taxize
#145
zachary-foster
opened
6 years ago
3
Add regexes for `database_list`
#144
zachary-foster
opened
6 years ago
7
When `filter_obs` removes taxa should it remove data for those taxa from other data sets?
#143
zachary-foster
closed
6 years ago
1
Another tutorial error
#142
lindsayveazey
closed
6 years ago
3
Add progress bars for `lookup_tax_data`
#141
zachary-foster
closed
6 years ago
1
Reduce spamming of "No API key" error in `lookup_tax_data`
#140
zachary-foster
closed
6 years ago
1
Add setters/accessors to basic classes
#139
zachary-foster
opened
6 years ago
11
Possible issue with defining hierarchies- error when calling hierarchy
#138
lindsayveazey
closed
6 years ago
4
For fuzzy matching of taxon names, report name changes
#137
zachary-foster
closed
6 years ago
0
Represent changes to taxonomy through time?
#136
sckott
opened
6 years ago
4
ENTREZ API key for NCBI database in extract_tax_data
#135
VGalata
closed
6 years ago
3
Fixed print bug in Taxon (authority).
#134
grabear
closed
6 years ago
1
Consider allowing columns in `taxmap` tables to be mapped to taxa
#133
zachary-foster
opened
6 years ago
0
Need better error msg when invalid colum specified
#132
zachary-foster
closed
6 years ago
0
`parse_tax_data` should be able to generate default column names
#131
zachary-foster
closed
6 years ago
0
Relationship with `taxlist`
#130
arendsee
opened
6 years ago
13
Consolidate documentation and code for shared options
#129
zachary-foster
opened
6 years ago
0
Make default `value` `"taxon_indexes"`
#128
zachary-foster
closed
6 years ago
0
refactor `leaves` to return a vector per taxon like `subtaxa`
#127
zachary-foster
closed
6 years ago
1
new function: `leaves_apply`
#126
zachary-foster
closed
6 years ago
0
Add codemeta file
#125
sckott
closed
6 years ago
3
Add color/formatting to output of print methods
#124
zachary-foster
closed
6 years ago
14
Figure out best way to handle filtering when there are datasets with no taxon IDs
#123
zachary-foster
closed
6 years ago
0
Cross package error with metacoder/taxa. Filter_taxa throws taxon IDs do not exist.
#122
grabear
closed
6 years ago
5
`mutate_obs`: create new vector/table/list if `target` is unknown
#121
zachary-foster
closed
6 years ago
2
Add `n_leaves`/`n_tips` function
#120
zachary-foster
closed
6 years ago
0
`stem` should not include first branch node
#119
zachary-foster
closed
6 years ago
0
`lookup_tax_data` thinks character taxon ids are names
#118
zachary-foster
closed
6 years ago
0
`filter_taxa`: make good error msgs when invalid inputs are given
#117
zachary-foster
closed
6 years ago
0
filter_taxa errors when no taxa pass filter
#116
zachary-foster
closed
6 years ago
0
Add length and item names to taxmap print methods for lists and vectors
#115
zachary-foster
closed
6 years ago
0
Taxmap print method adds `NA` when character vector is of long strings
#114
zachary-foster
closed
6 years ago
0
`parse_tax_data`: incorperate rank info
#113
zachary-foster
closed
6 years ago
0
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