rvosa bio-phylo issues - Githubissues

rvosa / bio-phylo

Bio::Phylo - Phyloinformatic analysis using Perl

http://search.cpan.org/dist/Bio-Phylo

GNU General Public License v3.0

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issues

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`set_root_below` leaves extraneous internal nodes behind

#45 dbaurain opened 4 years ago
3
Bio::Phylo fails to deal with polymorphic state symbols

#44 hlapp opened 5 years ago
1
Some tests fail if Statistics::R is installed

#43 eserte opened 6 years ago
0
Undeclared dependency Archive::Zip?

#42 eserte closed 6 years ago
1
Minor typos and formatting fixes in the manual

#41 hoytech closed 6 years ago
1
t/26-dom.t fails (with newest XML::LibXML?)

#40 eserte closed 6 years ago
5
NBA client code

#39 rvosa closed 4 years ago
2
Substitution model goals

#38 rvosa closed 6 years ago
2
Release ready

#37 rvosa closed 6 years ago
0
Develop multi-panel visualization graphics

#36 rvosa closed 6 years ago
3
Likelihood computations (beagle/PLL)

#35 rvosa closed 4 years ago
1
Bio::Phylo::XS goals

#34 rvosa closed 6 years ago
2
Bio::Phylo::Megatree goals

#33 rvosa closed 6 years ago
1
radial tree phylogram

#32 rvosa closed 7 years ago
0
t/34-json.t fails

#31 eserte closed 6 years ago
14
unable to reroot trees

#30 dbaurain closed 7 years ago
7
memory leaks

#29 rvosa closed 4 years ago
0
figtree messed up tip label roundtrip if integer

#28 rvosa closed 4 years ago
0
implement/verify PhyloWS client code

#27 rvosa closed 7 years ago
0
implement leaf stability index

#26 rvosa closed 7 years ago
1
implement CIPRES REST client code

#25 rvosa closed 6 years ago
2
factor out WritableRole from Writable

#24 rvosa closed 4 years ago
0
add treeannotator parsing

#23 rvosa closed 9 years ago
1
t/52-replicate-dna.t ..... Use of uninitialized value $model_params in concatenation (.) or string at /Users/rutger.vos/Documents/local-projects/bio-phylo/blib/lib/Bio/Phylo/Matrices/MatrixRole.pm line 1358, <DATA> line 1.

#22 rvosa closed 9 years ago
1
fix FASTA handling

#21 rvosa closed 4 years ago
1
"use strict;" in all perl modules

#20 moritz closed 9 years ago
0
Issues with IO::Handle and perl 5.10

#19 cjfields closed 8 years ago
6
Fix handling of annotations of ORM objects

#18 rvosa closed 4 years ago
0
get_cherries for unrooted trees

#17 rvosa closed 4 years ago
0
Fix memory leak

#16 rvosa closed 9 years ago
2
Minor nit: MYMETA.* in the tarball

#15 andk closed 10 years ago
2
Manual.pod lacks link to source code repo

#14 hlapp closed 10 years ago
1
Bio-Phylo-0.55 fails when SVG.pm is installed.

#13 shlomif closed 11 years ago
11
Bio::Phylo archive on CPAN looks to be partly broken

#12 smoretti closed 11 years ago
2
Pruning without removing nodes with single child that were already in tree

#11 fangly closed 11 years ago
0
Rerooting issue

#10 fangly closed 11 years ago
2
Bug in $node->get_sisters method

#9 fangly closed 11 years ago
1
Intricacies of Newick parsing

#8 fangly closed 11 years ago
3
Gracefully handle empty input files

#7 fangly closed 11 years ago
1
Feature requests

#6 fangly closed 11 years ago
0
Wrong link to bugtracker

#5 andk closed 11 years ago
1
Test failures due to hash randomisation in perl 5.17.6

#4 andk closed 11 years ago
1
Couple of fixes

#3 fangly closed 12 years ago
1
Tree simplification with support for quoted node names

#2 fangly closed 12 years ago
0
Newick tree simplification

#1 fangly closed 12 years ago
0