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saketkc
/
pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
https://saketkc.github.io/pysradb
BSD 3-Clause "New" or "Revised" License
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[BUG]
#71
mflynn-lanl
closed
3 years ago
4
Bump tqdm from 4.49.0 to 4.50.0
#70
dependabot[bot]
closed
3 years ago
1
Handle xml responses more gracefully
#69
saketkc
closed
4 years ago
1
[BUG] KeyError: 'EXPERIMENT_PACKAGE_SET'
#68
Maarten-vd-Sande
closed
4 years ago
4
The metadata file downloaded directly from the ncbi website is different from the one downloaded using pysradb.
#67
SchustekFlorian
closed
4 years ago
3
Bump tqdm from 4.48.2 to 4.49.0
#66
dependabot[bot]
closed
4 years ago
1
allow namespace
#65
Maarten-vd-Sande
closed
4 years ago
2
[BUG] layout reported as @xmlns
#64
Maarten-vd-Sande
closed
4 years ago
1
multithreaded ena loading
#63
Maarten-vd-Sande
closed
4 years ago
2
Bump pandas from 1.1.1 to 1.1.2
#62
dependabot[bot]
closed
4 years ago
0
Api key
#61
Maarten-vd-Sande
closed
4 years ago
15
[ENH] Accept API keys
#60
Maarten-vd-Sande
closed
4 years ago
1
fix collisions of ena_urls in merge
#59
Maarten-vd-Sande
closed
4 years ago
2
Sample exists on GEO, but not on SRA
#58
Maarten-vd-Sande
closed
4 years ago
3
Search feature only
#57
bscrow
closed
3 years ago
12
Question: When is ena_url reported?
#56
Maarten-vd-Sande
closed
4 years ago
3
[BUG] experiment_alias has _1 appended
#55
Maarten-vd-Sande
closed
4 years ago
1
[ENH] library_layout
#54
Maarten-vd-Sande
closed
4 years ago
1
Bump pandas from 1.0.1 to 1.1.1
#53
dependabot[bot]
closed
4 years ago
0
Bump requests from 2.23.0 to 2.24.0
#52
dependabot[bot]
closed
4 years ago
0
[GSoC2020] Suggested documentation changes
#51
bscrow
closed
3 years ago
3
discrepancies between websearch and pysradb
#50
sebboegel
closed
3 years ago
3
Empty results error while searching
#49
sebboegel
closed
4 years ago
1
Error during batch downloading SRA files using SRAweb()
#48
anwarMZ
closed
4 years ago
5
Python API fails to retrieve metadata in some cases
#47
sejmodha
closed
4 years ago
5
Error using python API for batch SRAweb search
#46
anwarMZ
closed
4 years ago
19
Pysradb metadata does not work for some project accession numbers
#45
bscrow
closed
4 years ago
1
Issue with piping from pysradb search to pysradb download
#44
bscrow
closed
3 years ago
3
[GSoC2020] Basic search feature
#43
bscrow
closed
4 years ago
9
directing output in external hard drive
#42
amitpande74
closed
4 years ago
6
Probleme with pip from metadata to download
#41
jeammimi
closed
4 years ago
2
download fails for SRP125265
#40
et-jaynes-in-a-banana-suit
closed
4 years ago
10
Python API doc examples seem to use sra_metadata with detailed=True
#39
victorlin
closed
3 years ago
2
Support Pubmed IDs for search and metadata
#38
saketkc
closed
2 years ago
1
Bug fix for detailed mode with multiple SRPs
#37
saketkc
closed
4 years ago
1
Test case for multiple SRP in metadata
#36
saketkc
closed
4 years ago
1
Fetch many metadata accessions at once
#35
mvdbeek
closed
4 years ago
4
Fix SRR to GSM
#34
saketkc
closed
4 years ago
1
changed print statement to original
#33
DaasDaham
closed
4 years ago
2
Changed back to original print command
#32
DaasDaham
closed
4 years ago
1
Issue #26 test cases and uri code updated
#31
DaasDaham
closed
4 years ago
11
Add a check for kwargs
#30
dibyaaaaax
closed
4 years ago
4
keyerror while checking for a key in kwargs
#29
dibyaaaaax
closed
4 years ago
0
Update CONTRIBUTING.rst
#28
DaasDaham
closed
4 years ago
1
Solves Issue #26 using uri filenames.
#27
DaasDaham
closed
4 years ago
4
Error not thrown when entering wrong db path
#26
DaasDaham
closed
4 years ago
0
Python Api
#25
bhavaygg
closed
4 years ago
7
Keyerror in srr_to_gsm function in sraweb.py
#24
dibyaaaaax
closed
4 years ago
2
Tests for commands of the SRAweb module
#23
dibyaaaaax
closed
4 years ago
13
Support search on SRAweb mode
#22
saketkc
closed
3 years ago
3
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