sanger-pathogens assembly_improvement issues

sanger-pathogens / assembly_improvement

Improve the quality of a denovo assembly by scaffolding and gap filling

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issues

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Useless use of concatenation (.) or string in void context

#85 Gorkhmaz-Abbaszade opened 2 weeks ago
0
access issue

#84 mmpust opened 3 months ago
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Removed redundant statement

#83 kpepper closed 4 years ago
1
Minor fixes

#82 seretol closed 4 years ago
0
Use travis to tag and release commits to master

#81 seretol closed 4 years ago
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Mummer error

#80 koushik1989 opened 5 years ago
1
Intermediate file not found?

#79 joanmarticarreras opened 5 years ago
1
Added changelog

#78 ssjunnebo closed 5 years ago
0
Include tests in README

#77 ssjunnebo closed 5 years ago
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include paper

#76 ssjunnebo closed 6 years ago
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update readme

#75 ssjunnebo closed 6 years ago
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rename license file

#74 ssjunnebo closed 7 years ago
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update AUTHORS and rename LICENSE

#73 ssjunnebo closed 7 years ago
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Option -t tblastx can not open reference when it is in subfolder

#72 ghost opened 7 years ago
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count the number of sequences in the assembly

#71 andrewjpage closed 7 years ago
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Trying to use SSpace-Long Read

#70 subnandakumar opened 7 years ago
1
update from 108 to 118

#69 andrewjpage closed 7 years ago
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add aligner expected by current SSPACE to SSpace/Config.pm; fixes issue #67

#68 coffeetocode opened 7 years ago
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Call to SSPACE dies due to invalid config file (expects aligner as second argument)

#67 coffeetocode opened 7 years ago
0
Question about output

#66 KrystalTW opened 7 years ago
0
Could not read file (reference file) error

#65 george-githinji opened 7 years ago
2
closed filehandle in t/Abacas/Main.t

#64 vaofford closed 7 years ago
0
switched from File::Slurp to File::Slurper

#63 vaofford closed 7 years ago
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capture errors in t/IvaQC/Main.t and t/Validate/Executable.t

#62 vaofford closed 7 years ago
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change to dist zilla starter bundle

#61 nds closed 8 years ago
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improve usage text

#60 andrewjpage closed 8 years ago
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example dataset

#59 andrewjpage closed 8 years ago
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NDS circlator merge logs and quiver file tidy up

#58 nds closed 8 years ago
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NDS add quiver wrapper

#57 nds closed 8 years ago
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Warn if iva_qc system call returns error

#56 nds closed 8 years ago
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NDS add quiver wrapper

#55 nds closed 8 years ago
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Add circlator wrapper

#54 nds closed 9 years ago
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Do not die on iva qc error

#53 nds closed 9 years ago
0
Changed Carla email address to path-help

#52 aslett1 closed 9 years ago
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Add iva qc wrapper

#51 nds closed 9 years ago
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Use gunzip role instead of bio perl to handle zipped files

#50 nds closed 9 years ago
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Add TravisCI

#49 bewt85 closed 9 years ago
1
updated sanity checking of executables and new tests

#48 nds closed 9 years ago
0
Update usage, check if exec exists, do not sga quality filter and bud fix zip file name

#47 nds closed 9 years ago
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Add trimmomatic

#46 martinghunt closed 10 years ago
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Fix binary file encoding so dzil test works

#45 martinghunt closed 10 years ago
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Added AUTHORS file

#44 aslett1 closed 10 years ago
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abs_path to inputs added

#43 carlacummins closed 10 years ago
0
update the default executable locations for the read correction and quasr

#42 andrewjpage closed 10 years ago
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Bug fix to stop dying when reference sequence provided by user

#41 martinghunt closed 10 years ago
0
Updated prereqs to include java

#40 carlacummins closed 10 years ago
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Get SSPACE and GapFiller modules & scripts to accept number of threads

#39 nds closed 11 years ago
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Deal with single cell reads differently when getting kmer sizes

#38 martinghunt closed 11 years ago
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Iterative abacas

#37 CraigPorter closed 11 years ago
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Order contigs

#36 CraigPorter closed 11 years ago
0