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sanger-tol
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genomenote
Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
https://pipelines.tol.sanger.ac.uk/genomenote
MIT License
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Update `create_table` to deal with optional inputs
#50
priyanka-surana
closed
1 year ago
0
N50 from GoaT not always available
#49
priyanka-surana
closed
1 year ago
2
update `bedtools_bamtobed` config settings
#48
priyanka-surana
closed
1 year ago
0
Update bed_filter
#47
priyanka-surana
closed
1 year ago
1
update dev
#46
priyanka-surana
closed
1 year ago
7
Unnecessary sort
#45
muffato
closed
1 year ago
0
Merqury
#44
priyanka-surana
closed
2 years ago
6
Busco
#43
priyanka-surana
closed
2 years ago
1
N50
#42
priyanka-surana
closed
2 years ago
0
Documentation
#41
priyanka-surana
closed
2 years ago
0
Configs
#40
priyanka-surana
closed
2 years ago
0
Automate input normalisation
#39
muffato
closed
2 years ago
0
Contact maps
#38
priyanka-surana
closed
2 years ago
0
Automate input
#37
priyanka-surana
closed
2 years ago
10
Update documentation
#36
priyanka-surana
closed
1 year ago
0
CHANGELOG
#35
priyanka-surana
closed
1 year ago
0
JSON files
#34
priyanka-surana
closed
1 year ago
0
CITATIONS
#33
priyanka-surana
closed
1 year ago
0
docs/parameter
#32
priyanka-surana
closed
1 year ago
0
docs/output
#31
priyanka-surana
closed
1 year ago
0
docs/usage
#30
priyanka-surana
closed
1 year ago
0
docs/README
#29
priyanka-surana
closed
1 year ago
0
README
#28
priyanka-surana
closed
1 year ago
0
Subworkflow: table_statistics
#27
priyanka-surana
closed
1 year ago
0
BUSCO
#26
priyanka-surana
closed
2 years ago
1
Organelles
#25
priyanka-surana
closed
1 year ago
2
Sex chromosomes
#24
priyanka-surana
opened
2 years ago
2
Genome mappability
#23
priyanka-surana
opened
2 years ago
4
Subworkflow: check_input
#22
priyanka-surana
closed
2 years ago
1
Local module: input_check
#21
priyanka-surana
closed
2 years ago
0
Large test
#20
priyanka-surana
closed
11 months ago
0
Large test
#19
priyanka-surana
closed
1 year ago
0
Medium test
#18
priyanka-surana
closed
11 months ago
0
Medium test
#17
priyanka-surana
closed
1 year ago
0
Small test
#16
priyanka-surana
closed
11 months ago
0
Small test
#15
priyanka-surana
closed
1 year ago
0
Small test dataset
#14
priyanka-surana
closed
2 years ago
1
Transcript mappability
#13
priyanka-surana
opened
2 years ago
1
Kmer completeness
#12
priyanka-surana
closed
2 years ago
1
Base pair QV
#11
priyanka-surana
closed
2 years ago
1
NG50
#10
priyanka-surana
closed
2 years ago
1
Subworkflow: contact_maps
#9
priyanka-surana
closed
2 years ago
0
Local module: pretext
#8
priyanka-surana
closed
2 years ago
2
Local module: cooler/cload_pairs
#7
priyanka-surana
closed
2 years ago
4
Nf-core module: cooler/zoomify
#6
priyanka-surana
closed
2 years ago
0
Nf-core module: samtools/faidx
#5
priyanka-surana
closed
2 years ago
1
Local module: genome_filter
#4
priyanka-surana
closed
2 years ago
1
Local module: bed_filter
#3
priyanka-surana
closed
2 years ago
4
Nf-core module: samtools/view
#2
priyanka-surana
closed
2 years ago
0
Nf-core module: bamtools/bamtobed
#1
priyanka-surana
closed
2 years ago
3
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