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sbslee
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dokdo
A Python package for microbiome sequencing analysis with QIIME 2
https://dokdo.readthedocs.io
MIT License
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KeyError: "['merged'] not in index", after running "dokdo.denoising_stats_plot"
#58
Sara-Mashhadi-Nejad
closed
9 months ago
2
ImportError: cannot import name 'diversity_lib'
#57
Congnguyenn
closed
11 months ago
2
import process issue
#56
yeon-y
closed
1 year ago
5
[taxa_abundance_box_plot] Deletion of notation of species not observed in samples
#55
yonghyun09
closed
1 year ago
2
[taxa_abundance_bar_plot] Customizing bar colors with using 'Seaborn palette' or 'Matplotlib colormap'
#54
yonghyun09
closed
1 year ago
2
How to plot many species on a bar graph
#53
yonghyun09
closed
1 year ago
8
1.16.0 dev
#52
sbslee
closed
1 year ago
0
Overlapping legends on clustermap
#51
rupesh-sinha
closed
1 year ago
3
Add taxon name in the pcoa biplot
#50
rupesh-sinha
closed
1 year ago
1
Select samples for PCoA
#49
rupesh-sinha
closed
1 year ago
3
ImportError: libhdf5_cpp.so.200: cannot open shared object file: No such file or directory
#48
yonghyun09
closed
2 years ago
2
ModuleNotFoundError: No module named 'skbio'
#47
rupesh-sinha
closed
2 years ago
8
1.15.0 dev
#46
sbslee
closed
2 years ago
0
exclude "others" from relative abundance and plot
#45
khemlalnirmalkar
closed
2 years ago
3
Add the rank abundance curve plot
#44
sbslee
opened
2 years ago
0
taxa_abundance_bar_plot issue
#43
JetbluejetYJ
closed
2 years ago
1
1.14.0 dev
#42
sbslee
closed
2 years ago
0
dokdo `beta_parallel_plot` issue
#41
JetbluejetYJ
closed
2 years ago
1
Implementing differential abundance analysis
#40
khemlalnirmalkar
opened
2 years ago
2
Plot options for `beta_2d/3d_plot` and `taxa_abundance_box_plot` methods
#39
khemlalnirmalkar
closed
2 years ago
13
1.13.0 dev
#38
sbslee
closed
2 years ago
0
correlation analysis
#37
khemlalnirmalkar
closed
2 years ago
11
1.12.0 dev
#36
sbslee
closed
2 years ago
0
alpha and beta diversity without qiime file
#35
khemlalnirmalkar
closed
2 years ago
7
`alpha_rarefaction_plot` apparently ignores 'N/A' values when plotting
#34
sbslee
closed
2 years ago
0
Update `make-manifest` command to ignore `Undetermined.fastq.gz`
#33
sbslee
closed
3 years ago
0
Dokdo issue
#32
JetbluejetYJ
closed
3 years ago
0
Update docs
#31
JetbluejetYJ
closed
3 years ago
1
Problem with taxa_abundance_bar_plot
#30
RayanaFeltrin
closed
3 years ago
8
dokdo summarize error
#29
JetbluejetYJ
closed
3 years ago
1
Any plan to publish to Pypi or Conda ?
#28
ivaquero
opened
3 years ago
1
Use of taxa_names in taxa_abundance_bar_plot
#27
mishkb
opened
3 years ago
4
Reverse order of legend for taxa_abundance_bar_plot
#26
mishkb
closed
3 years ago
5
1.11.0 dev
#25
sbslee
closed
3 years ago
0
Heatmap with prettified names?
#24
mishkb
closed
3 years ago
11
can i install without qiime2 in windows
#23
khemlalnirmalkar
closed
3 years ago
4
how to make heatmap with text file
#22
khemlalnirmalkar
closed
3 years ago
16
can we use dokdo without qiime files
#21
khemlalnirmalkar
closed
3 years ago
11
1.10.0 dev
#20
sbslee
closed
3 years ago
0
Deprecate the artist_kwargs argument from plotting methods
#19
sbslee
closed
3 years ago
0
orders and group mismatch
#18
khemlalnirmalkar
closed
3 years ago
9
how to control the color codes for specific bacteria
#17
khemlalnirmalkar
closed
3 years ago
16
1.9.0 dev
#16
sbslee
closed
3 years ago
0
installation issue
#15
khemlalnirmalkar
closed
3 years ago
6
genus level average bar plot
#14
khemlalnirmalkar
closed
3 years ago
6
1.8.0 dev
#13
sbslee
closed
3 years ago
0
1.8.0 dev
#12
sbslee
closed
3 years ago
0
1.7.0 dev
#11
sbslee
closed
3 years ago
0
Ideas for the next Dokdo version (1.7.0)
#10
sbslee
closed
3 years ago
0
1.6.0 dev
#9
sbslee
closed
3 years ago
0
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