issues
search
scverse
/
squidpy
Spatial Single Cell Analysis in Python
https://squidpy.readthedocs.io/en/stable/
BSD 3-Clause "New" or "Revised" License
428
stars
79
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fix var_by_distance to pass test after pandas update
#794
LLehner
closed
8 months ago
0
error when sq.im.segment
#793
lvmt
closed
7 months ago
2
Fix/spatial neighs knn
#792
michalk8
closed
8 months ago
0
sq.pl.spatial_scatter return_ax = True not working
#791
parser-algebra-0m
opened
8 months ago
0
Allow for spatial perturbation screen analysis
#790
timtreis
opened
9 months ago
6
Include more options for niche definitions
#789
timtreis
opened
9 months ago
11
Analysing 3D data
#788
timtreis
opened
9 months ago
0
Any existing effort to port squidpy functionalities to R?
#787
stemangiola
closed
3 months ago
1
Memory Consumption Issue in CosMx.
#786
ayumatsubo
closed
3 months ago
1
[pre-commit.ci] pre-commit autoupdate
#785
pre-commit-ci[bot]
closed
8 months ago
1
Comparisons between groups of samples
#784
grst
opened
9 months ago
5
Parameters of squidpy.gr.spatial_neighbors()
#783
Qirongmao97
closed
3 months ago
1
Cannot load Visium_FFPE_Mouse_Brain,Visium_FFPE_Human_Normal_Prostate. Error: HTTP Error 403: Forbidden
#782
Rayjrz
opened
9 months ago
3
Cannot load Visium_FFPE_Mouse_Brain. Error: HTTP Error 403: Forbidden
#781
Rayjrz
closed
9 months ago
0
Cannot load Visium_FFPE_Mouse_Brain. Error: HTTP Error 403: Forbidden
#780
Rayjrz
closed
9 months ago
0
Do we need to normalization and scaling before calculating spatial autocorrelation?
#779
Qirongmao97
closed
2 months ago
1
Revert "Update template to v0.3.0"
#778
grst
closed
9 months ago
3
Update template to v0.3.0 (#773)
#777
giovp
closed
9 months ago
1
Geographically weighted regression (GWR) for gene-gene correlation
#776
SNOL2
opened
10 months ago
1
correct shuffling of annotations in nhood enrichment
#775
giovp
closed
8 months ago
1
Spatial network CSR matrix seems not symmetrical
#774
AlexCoul
closed
10 months ago
2
Update template to v0.3.0
#773
scverse-bot
closed
9 months ago
1
Error Importing Squidpy
#772
dparmaksiz16
closed
10 months ago
2
[pre-commit.ci] pre-commit autoupdate
#771
pre-commit-ci[bot]
closed
10 months ago
1
`sq.pl.spatial_segment`: wrong cells selected by `groups` parameter
#770
colganwi
opened
10 months ago
1
[pre-commit.ci] pre-commit autoupdate
#769
pre-commit-ci[bot]
closed
11 months ago
1
CODEX
#768
matthew-lee1
closed
3 months ago
2
fix napari install
#767
giovp
closed
11 months ago
1
adjusted CellComposite and CellLabels loading in read_nanostring
#766
FrancescaDr
closed
10 months ago
2
[pre-commit.ci] pre-commit autoupdate
#765
pre-commit-ci[bot]
closed
11 months ago
1
example data in figshare 403: Forbidden
#764
biobai
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#763
pre-commit-ci[bot]
closed
11 months ago
1
Visualize adata interactively with Napari
#762
ZhengTiger
closed
12 months ago
1
How to
#761
Cucuapple
closed
12 months ago
0
Incorporate Monkeybread and CRAWDAD into Squidpy framework
#760
SNOL2
closed
12 months ago
1
fix precommit
#759
giovp
closed
12 months ago
1
Turning off multiprocessing completely
#758
andrew-weisman
opened
12 months ago
3
error loading Nanosctring CosMx dataset
#757
GhobrialMoheb
closed
3 months ago
3
update
#756
giovp
closed
1 year ago
1
sq.gr.co_occurrence gives different results for n_splits=1 and n_splits>1
#755
JuergenLippoldt
opened
1 year ago
1
Xenium image and segmentation
#754
Pointillomic
opened
1 year ago
1
Problem using sq.pl.co_occurrence on own data
#753
ofrag
closed
10 months ago
7
sq.pl.spatial_scatter produces blank plot
#752
wdg118
closed
12 months ago
4
Issues of mask_circle in function squidpy.im.calculate_image_features
#751
ZiqianZheng
opened
1 year ago
0
How to analyze over 100 images?
#750
sailseem
opened
1 year ago
0
sq.pl.spatial_scatter() for stereo-seq without .uns['spatial']
#749
YuchiQiu
closed
2 months ago
1
How to read nanostring Geomx DSP data
#748
jwoods9
closed
2 months ago
2
Add cruft.json
#747
LLehner
closed
12 months ago
1
sq.read.visium(): Incorrectly reads tissue_positions.csv
#746
frederick-de-baene
opened
1 year ago
3
[pre-commit.ci] pre-commit autoupdate
#745
pre-commit-ci[bot]
closed
1 year ago
2
Previous
Next