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ray
Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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make clean should erase .o for bz2 and z too
#98
sebhtml
closed
11 years ago
1
Add back the name in NetworkTest.txt
#97
sebhtml
closed
11 years ago
1
Messaging layer: push_back(Message*message) !
#96
sebhtml
closed
11 years ago
1
Export configuration options so that other Makefiles see them too !
#95
sebhtml
closed
11 years ago
1
Move LDFLAGS at the end (see Debian patch downstream)
#94
sebhtml
closed
11 years ago
1
Remove any limitation (if any) regarding the number of input files
#93
sebhtml
closed
11 years ago
1
for SRA000271 on mp2, it takes too much time to write Scaffolds.fasta
#92
sebhtml
closed
11 years ago
2
Profile Ray during the scaffolding on mp2
#91
sebhtml
closed
11 years ago
9
profile Ray during the seed extension
#90
sebhtml
closed
11 years ago
4
gcc 4.7.0 + open-mpi 1.6.2 breaks Ray
#89
sebhtml
closed
11 years ago
5
It would be useful to be able to build a distributed de Bruijn graph from several references
#88
sebhtml
closed
11 years ago
1
-version should not print stuff related to ComputeCore
#87
sebhtml
closed
11 years ago
1
Ray v2.1.0 gives bad k-mer coverage distributions
#86
sebhtml
closed
11 years ago
27
likely a bug when 0 nucleotides are generated in contigs
#85
sebhtml
closed
11 years ago
3
Enhance partition files
#84
sebhtml
closed
11 years ago
1
the AMOS code path should not be activated at all without -amos !
#83
sebhtml
closed
11 years ago
1
Patch the merge for faster results
#82
sebhtml
closed
9 years ago
2
Only 1 rank?
#81
habibr
closed
11 years ago
5
Error: all buffers are dirty !, chunks: 17
#80
sebhtml
closed
11 years ago
2
the code is suppose to work without __SEND_LOWER, but it does not.
#79
sebhtml
closed
11 years ago
3
-minimum coverage to store is now an option -minimum-coverage-to-store, default is 2
#78
sebhtml
closed
11 years ago
2
only store the edges of the lowest kmer of a pair
#77
sebhtml
closed
11 years ago
2
Warning: the kmer CCCCTGCACCCCTGAAATCTG has a strange coverage: 1, it will be skipped for the children listing
#76
sebhtml
closed
11 years ago
1
missing edges ?
#75
sebhtml
closed
11 years ago
3
Please, don't forget an option to obtain the list of the unused Reads as discussed previously.
#74
sebhtml
closed
11 years ago
1
Corrected the test the determines the quality control results
#73
plpla
closed
11 years ago
0
please pull!
#72
plpla
closed
11 years ago
1
move the handlers outside MessageProcessor.
#71
sebhtml
closed
11 years ago
1
Reduce the number of parallel paths
#70
sebhtml
closed
11 years ago
1
there are dirty buffers when the routing is enabled for large jobs
#69
sebhtml
closed
11 years ago
1
Added an option to ignore highly-covered seeds.
#68
plpla
closed
11 years ago
0
pull me!!!
#67
plpla
closed
12 years ago
3
Scaffolding for unpaired read
#66
plpla
closed
12 years ago
6
Is there an option for Ray to output reads not used in the assembly? Is this in the AMOS file?
#65
sebhtml
opened
12 years ago
4
add a list of codenames for RayPlatform and Ray
#64
sebhtml
closed
12 years ago
0
pseudomonas-s system test fails since v1.7
#63
sebhtml
opened
12 years ago
0
Overlapping contigs - ratio < 10%
#62
zorino
opened
12 years ago
1
reduce the amount of information in the standard output
#61
sebhtml
closed
11 years ago
1
give an error when commands provided are incorrect for -p
#60
sebhtml
closed
11 years ago
1
scaffolder checkpoint
#59
sebhtml
opened
12 years ago
1
Possible infinite parallel loop
#58
sebhtml
closed
12 years ago
3
group IO operations for checkpointing.
#57
sebhtml
closed
11 years ago
3
add tutorials on the ray web site and also a frequently askewd questions
#56
sebhtml
closed
11 years ago
1
A bug in Ray v2.0.0-rc7 creates duplicated contigs in rare cases
#55
sebhtml
closed
12 years ago
2
Move some runtime settings in RayPlatform.git
#54
sebhtml
closed
12 years ago
0
add ReadHandle for read handles
#53
sebhtml
closed
12 years ago
3
Crash with the extension
#52
sebhtml
closed
12 years ago
7
add number of k-mers in graph too
#51
sebhtml
closed
12 years ago
1
Runtime optimization: redundancy in fusions
#50
sebhtml
closed
12 years ago
6
Insert peaks (again but in 2.0.0-rc4)
#49
mscook
closed
12 years ago
2
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